KEGG   Prunus dulcis (almond): 117624044
Entry
117624044         CDS       T07328                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 4-like isoform X1
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
pdul  Prunus dulcis (almond)
Pathway
pdul03020  RNA polymerase
pdul03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pdul00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    117624044
  09124 Replication and repair
   03420 Nucleotide excision repair
    117624044
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pdul03021]
    117624044
   03400 DNA repair and recombination proteins [BR:pdul03400]
    117624044
Transcription machinery [BR:pdul03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     117624044
DNA repair and recombination proteins [BR:pdul03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      117624044
SSDB
Motif
Pfam: RNA_pol_Rpb4 HSM3_C Peptidase_M26_C
Other DBs
NCBI-GeneID: 117624044
NCBI-ProteinID: XP_034211050
LinkDB
Position
4:complement(131491..136572)
AA seq 237 aa
MSEKGGKGFSLPTGKAVKSSLKSTPSTKDGLLFLRSLLFLTSSLKGKDDSSTKSKKGRKV
QFDSEGLHEPKSNFSSKFDNPAAASGKDWGKGGKGDKVGNGRKKEPQPLELKIEQELPQS
AKCLMDCEAADILQGIQEQIILLSKDPTIKIPVSFDKGLQYTKRTSHYTNPQSVRKVLET
LTKYGVSDGEISVIANVCPETTDEVFALVPSLKTTRSVLSQPLKEVLSELTKLKQST
NT seq 714 nt   +upstreamnt  +downstreamnt
atgtcggagaaaggaggaaaagggttttctttgcctactggcaaagcagtaaaatcttca
ctgaaatctaccccttctacaaaggatggtctgctttttcttcgctctttacttttctta
acttcttccttgaaagggaaggatgatagctcaacaaagtccaagaaggggagaaaagtc
cagttcgattctgaaggtttgcatgaacccaaatccaacttctcgtcaaaatttgataac
ccagctgctgcctcagggaaagactggggcaaagggggaaaaggagacaaggttggaaat
ggcagaaagaaagaaccacagccactggagctcaaaattgagcaggaactgccacagagt
gccaaatgtctgatggattgtgaggctgcggatatattacaaggaatccaggagcaaatt
atcctgttgtctaaagatcctactattaaaatccctgtatcattcgacaagggactgcag
tacaccaaaagaaccagccattataccaatccccaatctgtcagaaaagttcttgagact
ctcacaaaatatggtgtctcagatggcgagataagtgtgattgccaatgtttgtcccgaa
accactgatgaagtttttgctctagtaccatccttgaagactacgagaagcgtgctcagc
caaccgctcaaagaagtcttaagtgagctaactaagcttaaacagtctacataa

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