Entry |
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Name |
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KO |
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Organism |
pdul Prunus dulcis (almond)
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Pathway |
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Brite |
KEGG Orthology (KO) [BR:pdul00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117624304
09124 Replication and repair
03420 Nucleotide excision repair
117624304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:pdul04121]
117624304
03400 DNA repair and recombination proteins [BR:pdul03400]
117624304
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:pdul04147]
117624304
Ubiquitin system [BR:pdul04121]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Cullin
117624304
DNA repair and recombination proteins [BR:pdul03400]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
117624304
TCR (transcription coupled repair) factors
Cul4-CSA complex
117624304
Exosome [BR:pdul04147]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117624304
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
4:4183240..4191491
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AA seq |
830 aa
MSLMSHPTKRSSAINNNNSSSTSSSLNPSSGPPMKKAKSQAVACSLDPSKNGLHHHHHHH
PHTHPSQDPDNDVVFDPSTMALDEDLKSDDPSSRAVAANLSRKKAQPPQPTKKLVIKLLK
AKPTLPTNFEEETWAKLKSAICAIFLKKPDSCDSEKLYQAVNDLCLHKMGGSLYQRIEKE
CERHIAAALQSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRS
LWDMGLQLFRKHLSLSPEVEHKTVTGLLRLIEKERLGEAVARTLLNHLLKMFTALGIYSE
SFEKPFLECTSEFYAAEGMKYMQQADVPDYLKHVETRLHEEHERCLIYLDASTRKPLVAT
AEKQLLERHIPAILDKGFTLLMDGNRIEDLQRMYTLFSRVNALESLRQALSTYIRRTGQG
MIMDEEKDREMVSSLLEFKASLDTIWEESFFKNEAFCNTIKDAFEHLINLRQNRPAELIA
KFLDEKLRAGNKGTSEEELEGMLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASID
AEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLT
TGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKEL
AVSLFQTVVLMLFNDAEKLSLQDIKDSTGIEDKELRRTLQSLACGKVRVLQKFPKGRDVE
DDDTFTFNDGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKV
LSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA |
NT seq |
2493 nt +upstreamnt +downstreamnt
atgagtttgatgtctcaccccacaaaacgctcctcagccatcaacaacaacaacagcagc
agcacctcctcctctctcaacccttcttcaggcccacccatgaaaaaggccaagtctcag
gccgtcgcctgttccctcgatcccagcaagaatggcctccaccaccaccaccaccaccat
cctcacactcacccttctcaggaccccgataacgacgtcgtattcgacccctctaccatg
gccctcgacgaagatctcaagtccgacgatccctcttcccgtgccgtcgccgccaatttg
tcccgcaaaaaggcccagccccctcagccaaccaagaagctggtcatcaagctcctgaaa
gctaaacccacgttgcccacaaattttgaagaggaaacatgggcaaagctgaagtcagcc
atttgtgctatatttttaaagaaacctgattcttgtgactcggagaagctttatcaggcc
gttaatgatctttgcctgcacaagatgggaggaagtctttatcaacgaattgaaaaggag
tgtgaaagacacatagctgcggcactgcaatctttggttggccaaagcccagacttggtg
gtttttttatcacttgttgagagatgctggcaagatctttgtgaccagatgttgatgatt
cgcggtatagccttgtatcttgatcgaacatatgtgaaacaaacaccaaatgtgcgttca
ttgtgggacatgggactgcagcttttccgtaaacatctttctctgtctccggaagttgag
cacaaaactgtcacgggcctcttaagactgatcgagaaagaaagattgggtgaagcggtg
gctaggactctacttaaccatcttttgaagatgtttacagctttaggaatctactcagaa
agctttgagaagccatttcttgagtgcacttcggaattttatgccgctgaaggtatgaaa
tacatgcagcaagcagatgttccagattacttgaagcatgtggagacaaggttgcatgaa
gaacatgaaagatgtttaatctacctggatgcaagtacaaggaagccattagttgcaaca
gccgaaaagcagcttttagaacgccatatacctgccattctcgacaagggatttacattg
ctgatggatgggaatcgaattgaggatcttcaaaggatgtacactcttttctctagagtc
aatgcccttgaatcactgaggcaagcgcttagtacatacattcggaggacaggtcagggc
atgatcatggatgaagaaaaagatagagaaatggtttcttcccttttggaatttaaggct
tctcttgacactatatgggaagaaagctttttcaagaatgaagcattttgcaacaccata
aaggatgcatttgagcatcttattaatctccgtcagaaccgacctgctgagctgattgca
aagtttttggacgagaagcttcgtgctgggaataagggtacttctgaagaggaattggag
ggaatgctggataaagtcttagttttattcaggtttatacagggcaaggatgtatttgaa
gcattttataagaaggatcttgcgaaaagactacttttgggaaagagtgcttctatcgac
gcagagaaatctatgatttccaagctgaagactgagtgtggcagtcagtttacgaacaaa
ctcgaaggaatgtttaaggatattgaattgtcaaaagagataaatgagtccttcaaacaa
tcatcccaggccaggacaaagctcccgtcagggattgagatgagtgttcatgtccttacg
actgggtactggccaacatatcctcccatggatgttagacttcctcatgaattgaatgtc
taccaggatatcttcaaagagttttacttaagcaagtacagcggtaggcgtttaatgtgg
caaaattcattaggtcactgtgtgttgaaagcagagtttcccaagggtaaaaaggagctt
gcagtttctctgtttcagactgttgtgttgatgctgtttaatgatgctgagaagctaagc
cttcaagacattaaggattcaactggcattgaggacaaggaactgagaagaactctgcag
tcccttgcatgtggaaaagttcgcgtcctgcaaaagtttcccaaagggagagatgtggag
gatgacgatacatttacgttcaatgacggatttactgctcctctctaccgcataaaggtg
aatgcaatccaaatgaaggaaacagtggaggagaacacgagcaccactgaaagagtattt
caagaccgccaatatcaggttgatgctgctattgttcggataatgaaaactaggaaggtg
ctgagccacactcttctgataacagaactgttccaacagcttaaatttccgataaagccg
gcagatttgaagaaaaggattgaaagcctgattgacagggagtacctagaacgggacaag
aacaaccctcaaatttacaactacctagcgtaa |