KEGG   Prunus dulcis (almond): 117624304
Entry
117624304         CDS       T07328                                 
Name
(RefSeq) cullin-4
  KO
K10609  cullin 4
Organism
pdul  Prunus dulcis (almond)
Pathway
pdul03420  Nucleotide excision repair
pdul04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:pdul00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    117624304
  09124 Replication and repair
   03420 Nucleotide excision repair
    117624304
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:pdul04121]
    117624304
   03400 DNA repair and recombination proteins [BR:pdul03400]
    117624304
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:pdul04147]
    117624304
Ubiquitin system [BR:pdul04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Cullin
     117624304
DNA repair and recombination proteins [BR:pdul03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      117624304
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      117624304
Exosome [BR:pdul04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   117624304
SSDB
Motif
Pfam: Cullin Cullin_Nedd8
Other DBs
NCBI-GeneID: 117624304
NCBI-ProteinID: XP_034211353
LinkDB
Position
4:4183240..4191491
AA seq 830 aa
MSLMSHPTKRSSAINNNNSSSTSSSLNPSSGPPMKKAKSQAVACSLDPSKNGLHHHHHHH
PHTHPSQDPDNDVVFDPSTMALDEDLKSDDPSSRAVAANLSRKKAQPPQPTKKLVIKLLK
AKPTLPTNFEEETWAKLKSAICAIFLKKPDSCDSEKLYQAVNDLCLHKMGGSLYQRIEKE
CERHIAAALQSLVGQSPDLVVFLSLVERCWQDLCDQMLMIRGIALYLDRTYVKQTPNVRS
LWDMGLQLFRKHLSLSPEVEHKTVTGLLRLIEKERLGEAVARTLLNHLLKMFTALGIYSE
SFEKPFLECTSEFYAAEGMKYMQQADVPDYLKHVETRLHEEHERCLIYLDASTRKPLVAT
AEKQLLERHIPAILDKGFTLLMDGNRIEDLQRMYTLFSRVNALESLRQALSTYIRRTGQG
MIMDEEKDREMVSSLLEFKASLDTIWEESFFKNEAFCNTIKDAFEHLINLRQNRPAELIA
KFLDEKLRAGNKGTSEEELEGMLDKVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASID
AEKSMISKLKTECGSQFTNKLEGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLT
TGYWPTYPPMDVRLPHELNVYQDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEFPKGKKEL
AVSLFQTVVLMLFNDAEKLSLQDIKDSTGIEDKELRRTLQSLACGKVRVLQKFPKGRDVE
DDDTFTFNDGFTAPLYRIKVNAIQMKETVEENTSTTERVFQDRQYQVDAAIVRIMKTRKV
LSHTLLITELFQQLKFPIKPADLKKRIESLIDREYLERDKNNPQIYNYLA
NT seq 2493 nt   +upstreamnt  +downstreamnt
atgagtttgatgtctcaccccacaaaacgctcctcagccatcaacaacaacaacagcagc
agcacctcctcctctctcaacccttcttcaggcccacccatgaaaaaggccaagtctcag
gccgtcgcctgttccctcgatcccagcaagaatggcctccaccaccaccaccaccaccat
cctcacactcacccttctcaggaccccgataacgacgtcgtattcgacccctctaccatg
gccctcgacgaagatctcaagtccgacgatccctcttcccgtgccgtcgccgccaatttg
tcccgcaaaaaggcccagccccctcagccaaccaagaagctggtcatcaagctcctgaaa
gctaaacccacgttgcccacaaattttgaagaggaaacatgggcaaagctgaagtcagcc
atttgtgctatatttttaaagaaacctgattcttgtgactcggagaagctttatcaggcc
gttaatgatctttgcctgcacaagatgggaggaagtctttatcaacgaattgaaaaggag
tgtgaaagacacatagctgcggcactgcaatctttggttggccaaagcccagacttggtg
gtttttttatcacttgttgagagatgctggcaagatctttgtgaccagatgttgatgatt
cgcggtatagccttgtatcttgatcgaacatatgtgaaacaaacaccaaatgtgcgttca
ttgtgggacatgggactgcagcttttccgtaaacatctttctctgtctccggaagttgag
cacaaaactgtcacgggcctcttaagactgatcgagaaagaaagattgggtgaagcggtg
gctaggactctacttaaccatcttttgaagatgtttacagctttaggaatctactcagaa
agctttgagaagccatttcttgagtgcacttcggaattttatgccgctgaaggtatgaaa
tacatgcagcaagcagatgttccagattacttgaagcatgtggagacaaggttgcatgaa
gaacatgaaagatgtttaatctacctggatgcaagtacaaggaagccattagttgcaaca
gccgaaaagcagcttttagaacgccatatacctgccattctcgacaagggatttacattg
ctgatggatgggaatcgaattgaggatcttcaaaggatgtacactcttttctctagagtc
aatgcccttgaatcactgaggcaagcgcttagtacatacattcggaggacaggtcagggc
atgatcatggatgaagaaaaagatagagaaatggtttcttcccttttggaatttaaggct
tctcttgacactatatgggaagaaagctttttcaagaatgaagcattttgcaacaccata
aaggatgcatttgagcatcttattaatctccgtcagaaccgacctgctgagctgattgca
aagtttttggacgagaagcttcgtgctgggaataagggtacttctgaagaggaattggag
ggaatgctggataaagtcttagttttattcaggtttatacagggcaaggatgtatttgaa
gcattttataagaaggatcttgcgaaaagactacttttgggaaagagtgcttctatcgac
gcagagaaatctatgatttccaagctgaagactgagtgtggcagtcagtttacgaacaaa
ctcgaaggaatgtttaaggatattgaattgtcaaaagagataaatgagtccttcaaacaa
tcatcccaggccaggacaaagctcccgtcagggattgagatgagtgttcatgtccttacg
actgggtactggccaacatatcctcccatggatgttagacttcctcatgaattgaatgtc
taccaggatatcttcaaagagttttacttaagcaagtacagcggtaggcgtttaatgtgg
caaaattcattaggtcactgtgtgttgaaagcagagtttcccaagggtaaaaaggagctt
gcagtttctctgtttcagactgttgtgttgatgctgtttaatgatgctgagaagctaagc
cttcaagacattaaggattcaactggcattgaggacaaggaactgagaagaactctgcag
tcccttgcatgtggaaaagttcgcgtcctgcaaaagtttcccaaagggagagatgtggag
gatgacgatacatttacgttcaatgacggatttactgctcctctctaccgcataaaggtg
aatgcaatccaaatgaaggaaacagtggaggagaacacgagcaccactgaaagagtattt
caagaccgccaatatcaggttgatgctgctattgttcggataatgaaaactaggaaggtg
ctgagccacactcttctgataacagaactgttccaacagcttaaatttccgataaagccg
gcagatttgaagaaaaggattgaaagcctgattgacagggagtacctagaacgggacaag
aacaaccctcaaatttacaactacctagcgtaa

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