Prunus dulcis (almond): 117624347
Help
Entry
117624347 CDS
T07328
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2 isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03020
RNA polymerase
pdul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117624347
09124 Replication and repair
03420 Nucleotide excision repair
117624347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdul03021
]
117624347
03400 DNA repair and recombination proteins [BR:
pdul03400
]
117624347
Enzymes [BR:
pdul01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117624347
Transcription machinery [BR:
pdul03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
117624347
DNA repair and recombination proteins [BR:
pdul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
117624347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
MRNIP
Motif
Other DBs
NCBI-GeneID:
117624347
NCBI-ProteinID:
XP_034211426
LinkDB
All DBs
Position
4:complement(2383293..2391307)
Genome browser
AA seq
1202 aa
AA seq
DB search
MDEEPEYDDQQYNDDDEDEITQEDAWAVISAYFEEKGLVRQQLDSFDEFIQNTMQEIVDE
SADIEIRPESQHNPGHQPDFAETTYRIKFGQIYLSKPMMTESDGETATLFPKAARLRNLT
YSAPLYVDVSKSIVKKGHDGEEVTETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELG
ECPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVAEVRSMAESQNRPPST
MFVRMLARTSSKGGSSGQYIRATLPYIRAEIPIIIVFRALGFVADKDILEHICYDFSDTQ
MMELLRPSLEEAFVIQNQQVALDYIGKRGATVGVSREKRIKYAKEILQKEMLPHVGVGEF
CETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVR
GYVQKCVDNGKELNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAS
TLSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSA
AYPILEFLEEWGTENFEEISPAVIPQATKIFVNGCWVGIHRDPEMLVKTLRKLRRRVDVN
TEVGVVRDIRLKELRIYTDYGRCSRPLFIVDKQRLLIKKKDIHALQQRENPEDGGWHDLV
AKGFIEYIDTEEEETTMISMTINDLVQARLNPEEAYSDTYTHCEIHPSLILGVCASIIPF
PDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLP
AGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSIFFRSYRDEEKKMGTLVKEDFGRPD
RANTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPMAQDEAQGQAASRYTRRDHSI
SLRHSETGIVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM
PWTVEGVTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVSCTLLKH
ASVDNISRALHSCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMVDDKIHSRGRG
PVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCGLI
AIANLKKNSFECRGCKNKTDIVQVYIPYACKLLFQELMSMAIAPRMLTKDIKPAKDQKKK
GA
NT seq
3609 nt
NT seq
+upstream
nt +downstream
nt
atggacgaggagcccgagtacgacgaccagcagtacaacgacgacgacgaagatgaaatc
acgcaggaggacgcctgggccgtcatctcagcctacttcgaagagaagggtttggtgcgc
caacagctcgactcattcgacgagttcattcagaacacaatgcaggaaatcgtcgatgag
tcggccgatatcgagattcgccccgagtcgcagcacaacccgggccaccagcctgatttc
gccgagactacatataggattaagttcggtcagatttatttgagtaagcccatgatgacc
gagtcggatggagaaactgcaaccttatttcccaaagctgcaaggttgagaaatctaacg
tactcagcacccttgtatgtggatgtctcaaagagcattgtaaagaaaggacatgatggt
gaagaagtcaccgaaactcaggatttcaccaaagtattcattggaaaggttcctataatg
cttcggtctagttattgcacgttgtaccagaattctgaaaaagatttaacagagctggga
gagtgtccatatgatcaaggtggatattttattataaatgggagtgaaaaggttctgatt
gcccaagagaagatgagcaccaatcatgtctacgtgttcaaaaagaggcagcctaacaag
tatgcctacgtggcggaagttcggtctatggcggagtcccaaaacagaccgcccagtaca
atgtttgtgcggatgcttgctcggactagttctaaagggggttcttctggacaatacatt
cgtgctactcttccatacattcgagctgaaattcctattattattgtattccgagctctc
gggtttgttgctgataaagacatattagagcatatatgttatgacttctctgatactcag
atgatggagttgcttagaccttctctggaagaagcatttgtgattcaaaatcaacaggtt
gcactcgactatattggaaaaagaggtgcaactgttggtgttagtagagaaaagaggatc
aagtatgcaaaagagatccttcaaaaggaaatgcttccacatgttggtgttggagaattt
tgtgagacaaagaaagcttactattttggatatatcattcacaggcttctactgtgtgca
cttggtcggagggcagaagatgatagggatcattatggcaacaagaggctggatcttgct
ggtcccttactgggaggcttgtttcgaatgttattcaggaagttgactagggatgtgaga
ggttatgtgcaaaagtgtgtcgataatggaaaggaacttaacctgcaatttgccatcaaa
gctaaaacaatcactagtggcctcaaatattcacttgctactgggaactgggggcaagca
aatgcagctggtacaagggctggagtgtcacaggtgttaaatcgtttgacatatgcgtcc
accttgtcacacttgagaaggctaaattctcccatagggcgtgaagggaaattggccaaa
ccacggcagttgcataactcgcagtgggggatgatgtgtccagctgaaacacctgaagga
caagcatgtggacttgtaaagaatcttgcgttgatggtatacatcacagtaggatcagct
gcatatccaatattggaatttttggaagaatggggtacagagaattttgaggaaatttcc
cctgcagttattccccaagccacgaaaatttttgttaatggctgttgggttggcatacat
cgtgatcctgaaatgttggtgaaaacattaagaaagctaaggcgacgggttgatgtcaat
actgaagttggggttgtcagagatatccgtcttaaagaattgcggatatatactgattat
ggccgttgcagtcgtccattattcatcgtggacaaacaaaggcttctcataaagaagaaa
gatattcatgcattacagcagagggaaaaccctgaagatggtggctggcatgaccttgta
gcaaagggatttatagaatatattgatacggaagaagaggagactacaatgatttccatg
acaattaatgatcttgtacaagcaaggctcaatcctgaagaggcatattctgacacttac
actcattgtgaaattcatccatcgcttattttgggtgtttgtgcttcaattataccattt
cccgatcataatcagtctccacgtaatacgtatcaatctgctatgggcaagcaagctatg
ggaatttatgtcaccaattatcagttccgaatggatacactggcgtatgttctgtactac
cctcagaagccccttgtcactacacgagccatggagcatcttcatttcaggcagcttcca
gctggcatcaatgctattgttgccatttcttgctattctggttataaccaggaagattct
gtcattatgaatcaatcctctatagaccgtggattcttccggtcaatattcttccgctct
tatagggacgaggagaaaaagatggggacccttgtcaaagaggatttcgggcgtccagac
agagcaaacacgatgggcatgcggcatggttcttacgacaagttggatgatgatggtctc
gcacctcctggaactagggtttcaggtgaagatgttatcataggaaagaccactcccatg
gctcaggatgaggcgcaagggcaagctgcttcacgatacacacggcgtgaccatagcata
agcttacgccacagtgaaacagggattgtggatcaggttctactgacgactaatgctgat
gggttgaggtttgtgaaagtaagggtgagatctgtccggataccacagattggtgataaa
tttagcagtagacatggacagaagggaacagtgggtatgacttatacacaagaagacatg
ccatggactgtggaaggggtcacccccgatattatcgtgaacccacatgctattccttct
cgaatgaccattggtcagcttattgagtgtatcatggggaaggttgcagctcacatgggg
aaggaaggagatgcaactccctttacggatgtgactgtgagttgcactctcttgaaacat
gcctctgtggacaatattagcagagctcttcacagctgtgggtatcaaatgcgtgggttt
gagaccatgtataatggccacacaggcaggcggcttagtgctatgatattccttggcccc
acatattaccagaggctgaagcatatggttgatgacaagatccattcccgtgggcggggt
ccagtacagatcctcacaaggcagcctgctgagggacgatctcgtgatggtggtctgcga
tttggagaaatggagcgagattgcatgattgcccatggcgctgctcattttctgaaagag
agattgttcgaccagagtgatgcatatagggttcatgtctgtgagcgttgtgggttaata
gctattgcaaatctcaagaagaattcatttgagtgcagaggttgcaagaataaaactgac
attgttcaggtatacattccctatgcttgcaagctgctcttccaagagcttatgtccatg
gctatagcaccaagaatgctcacaaaggacatcaagcccgccaaagaccaaaagaagaaa
ggagcctga
DBGET
integrated database retrieval system
