Prunus dulcis (almond): 117624429
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Entry
117624429 CDS
T07328
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2 isoform X1
KO
K03144
transcription initiation factor TFIIH subunit 4
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03022
Basal transcription factors
pdul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117624429
09124 Replication and repair
03420 Nucleotide excision repair
117624429
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdul03021
]
117624429
03400 DNA repair and recombination proteins [BR:
pdul03400
]
117624429
Transcription machinery [BR:
pdul03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
117624429
DNA repair and recombination proteins [BR:
pdul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
117624429
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tfb2
Tfb2_C
Helicase_C_3
MetRS-N
Motif
Other DBs
NCBI-GeneID:
117624429
NCBI-ProteinID:
XP_034211556
LinkDB
All DBs
Position
4:complement(2285704..2291176)
Genome browser
AA seq
455 aa
AA seq
DB search
MPQVRIIAKNFMDMVAALPAMKLDKLYENAFICEAILRSLPPLAKKYVLQMLCIEVPVTA
KSMEEWVLPDGVSKHRVAIDRLIQLRIFTETVDRKRETTYTLNPIFQTNLKKLLLYGVVL
PRDPMPSNVTVRLPSSEDLEAFALGQWECFLLQLINSSQIERPSNISSSMMKIFQRGLLS
QRDKEAPRLTESGFQFLLMDTNAQLWYIIREYISNSEERGVDSADLISFLLELSFHVTGE
AYNINTLTEVQKNTIKDLADLGLVKLQQGRKDSWFIPTRLATNLSVSLTDSSSRKQGFVV
VETNFRLYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYSAFENGITADQIISFL
QQNAHPRVAERVPSVPENVTDQIRLWETDLNRVEMTPAYHYDGFPSRDLFEGASDFARGY
NALLWEDPEDSKKMSLVVKAENHVHMREYLSRQRQ
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaggtgaggatcatagcgaagaatttcatggacatggtggctgctttgcccgcc
atgaagctcgacaagctctacgagaacgcattcatctgcgaagccattctcaggtctctg
ccaccgctagccaagaaatatgtcttacaaatgctatgcatcgaagttccagtgactgcc
aagtcaatggaggagtgggtgctgccggatggggtctccaaacacagagttgctattgat
cggctaattcagttgagaattttcactgaaactgttgacaggaagagagaaacaacttac
acattaaatcctatatttcagaccaatctcaagaagcttttgctttatggtgtagttttg
ccaagagacccgatgccttcgaatgttacagtgaggctcccaagctcagaggatcttgag
gcttttgccctaggacaatgggagtgtttcttgctgcaacttatcaactcatctcaaatt
gaaaggccgtcaaacatcagttcatccatgatgaaaatattccagcggggtcttttgagt
caaagagataaagaagctccaagattaactgaaagtggtttccagttcttgctgatggat
acaaatgcgcaactttggtacatcatcagagaatacatctctaactcggaggagcgtggg
gtagattctgcagatttgatttcattcctgctggagcttagttttcatgttacaggcgag
gcatataacataaatacattgactgaggttcagaagaatacgatcaaggatcttgcagat
ttaggattggtcaaacttcagcagggtcgtaaagacagttggtttatacctactagatta
gctactaatctttcagtgagcttgacagactcatcatcgaggaaacagggatttgtagtt
gtggaaacaaacttcaggctgtatgcctactcaacatctaaattacattgtgaaatttta
cgtcttttctcaagggtagaatatcaacttccaaaccttatagttggagcaataacaaaa
gaaagtttgtatagtgcttttgaaaatggcatcactgcagatcagataatttcttttctt
cagcagaatgcacatccacgtgttgcagagagagtaccatctgtacctgagaatgtcaca
gatcagattaggctgtgggaaacagatctgaatagggttgagatgactccagcgtatcat
tatgatggatttccatccagggatctctttgagggtgcttctgactttgcacgaggctat
aatgctctgctatgggaggatccagaggattcaaagaagatgtctttagtggtcaaggca
gaaaaccacgtgcacatgcgagaatatcttagccgtcaaaggcagtag
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