KEGG   Prunus dulcis (almond): 117626228
Entry
117626228         CDS       T07328                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
pdul  Prunus dulcis (almond)
Brite
KEGG Orthology (KO) [BR:pdul00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:pdul03009]
    117626228
Ribosome biogenesis [BR:pdul03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    117626228
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st NBCH_WD40 EIF3I WDR55 Beta-prop_EML_2 Beta-prop_TEP1_2nd WD40_CDC20-Fz Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_SPT8 Beta-prop_Vps41 Beta-prop_HPS5 Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_IFT122_1st Beta-prop_IP5PC_F Beta-prop_DCAF4 BCAS3_WD40 TPR_10
Other DBs
NCBI-GeneID: 117626228
NCBI-ProteinID: XP_034213778
LinkDB
Position
4:complement(9479120..9480820)
AA seq 410 aa
MSSSPHEIVLTSSPDGPIIAYDASSGAALAQFTGSRSPRRGLAIVGKSYIAASHISPTTA
SGSVHLYNWWSSTAFHNLPVPEPVAPLTVTSDGLYLFAGGLSGSVHGISIPSGDVLKPLP
AHSKPVSCLAISDDESLLISGSDDGTIVVVPIFQLVGASGYDSVEELILHRFAAHSDSVT
AIISGMGLCNSQIISCSLDCTCKFWSLLRGTLLRTIVFPCTISWVALNPTEPEFYVAGSD
GSVHKGSLKVGSRKLVTQGSELIAWTPKHGGAVVSVVMVNGGRNLISASEDGSVWVWEVD
AGQVIMALGNEMGSISDLVAATGINCSKAYGFGMSNGAYGSGNCHFGSSGKELMNMPIKK
ILEMEDVLKVAANDRNRAIDMLESAIAMYERLLELILKEAKRGSRNNKQW
NT seq 1233 nt   +upstreamnt  +downstreamnt
atgtcttcttctccacatgaaattgtcctcaccagctctcctgacggccccattattgcc
tatgatgcttcctcaggcgccgccctagcacaattcacaggcagccggtcaccacgccga
ggccttgcaattgttgggaagagttatattgctgcctcacacatatcaccaaccactgct
tctggttcagtccacctttacaattggtggtcttcaactgccttccataacctccctgtc
ccggagcccgttgcacccctcaccgtcacgtctgacgggttgtatctctttgccggtggc
ctatcaggcagtgtgcatggaatttcaatcccatcaggggatgtgctcaaaccattgcct
gcacatagcaagcctgtgtcttgccttgcaatcagtgatgatgagtcacttctgatttca
ggcagcgatgatgggaccattgttgttgtccctatctttcagcttgtaggagcctcagga
tatgacagtgtggaagaattgatattgcataggtttgctgctcattctgattcagtgact
gccattatttctggtatgggattatgcaactcccagattatctcatgctcattggattgc
acatgtaaattctggagtctcttgcgtggaacgctcctgcgtaccattgtgtttccatgc
actatttcatgggttgcattgaacccaacagagcctgagttctatgttgcaggatcagat
ggttcagtacacaagggatcactgaaagttggaagcaggaaacttgtgacccaaggcagt
gaattgatcgcgtggactccaaagcacggtggagcagttgtatctgtggtgatggtgaat
gggggaaggaatttgatatcggcttcggaagacgggagtgtttgggtctgggaagttgat
gcgggtcaggtgatcatggctcttggaaatgagatggggagcattagtgatctggtggca
gctacaggcataaattgtagcaaagcgtatggttttggaatgagcaatggtgcttacgga
tctggaaattgccactttgggtcttctggcaaagaacttatgaatatgccaataaagaaa
atattagaaatggaagatgtgttgaaagtggctgcaaatgatagaaacagagccattgat
atgcttgaatctgctattgcaatgtatgagaggctcttggaactcatcctcaaggaagcc
aagagaggtagtcgcaacaacaaacagtggtga

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