Prunus dulcis (almond): 117626323
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Entry
117626323 CDS
T07328
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9 isoform X1
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
pdul
Prunus dulcis (almond)
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdul03041
]
117626323
Enzymes [BR:
pdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117626323
Spliceosome [BR:
pdul03041
]
Complex C
Other components
Complex C specific factors
117626323
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
DEAD
HA2_N
AAA_19
AAA_30
AAA_7
ResIII
AAA_29
AAA_23
nSTAND3
Motif
Other DBs
NCBI-GeneID:
117626323
NCBI-ProteinID:
XP_034213881
LinkDB
All DBs
Position
4:2923579..2931592
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AA seq
690 aa
AA seq
DB search
MSQFWKPGAEKPRLVDDEEGGVLFFSSPSGYANIERQRQRLPVYKYRTSILYLVETHATT
IIVGETGSGKTTQIPQYLKEGGWADGGRVIACTQPRRLAVQSVASRVAEEMGVKLGEEVG
YTIRFEDVTNTGVTMIKFLTDGVLLREMMNDPLLTKYSVIMIDEAHERSISTDILLGLLK
KIQRRRPELRLIISSATIQAKSMSDFFQTSKRRRRPEGEELGPNMEPAVLSVEGRGFNVQ
IHYVEEPVPDYLRASVSTVLLIHEKEPMGDILVFLTGQDDIDAAVQLITEEDQNRGRKSS
GLMVLPLYSGLPRSEQELVFTPTPRGKRKVVISTNIAETSITLEGVVYVVDSGFSKQRFY
NPITDIENLVVAPISKASARQRTGRAGRVRPGKCYRLYTEEYFAKEMSAEGIPEIQRSNL
VPCVIQLKALGIDNILGFDWPASPSSEAMVRALEVLYSLGVLDDDAKLTSPTGFQIAEIP
LDPMISKMILASGQLGCSEEMITIAATLSIQSIWVSGWGSQKELDEAKLNFAAAEGDHVS
FLNVYKGFLQSGKSSQWCHKNFVNYQAMKKVLEIREQLRRTAQRIGIVLKSCERDTVVVR
KAITNGFFANACRLEASSHDGKYKTIRGSQEVYIHPSSVLFRVNPKWVLYHSLVSTDKQY
MRNVISIDPSWLTEAAPHFYQHQRLKSMVH
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcagttctggaaaccaggggccgagaagcctcgcctcgtcgacgacgaagaggga
ggagtccttttcttctcttccccttctgggtatgcaaatattgagaggcagaggcagagg
cttcccgtgtacaagtaccgcacatccattctctatttggtggagactcacgccactact
atcatagttggcgaaacgggcagcggaaaaaccactcaaattcctcagtacctcaaagaa
ggaggttgggctgatggtgggcgtgtaatagcatgtacccagccaagaagactggctgtc
cagtcagttgcttcaagggtggctgaagagatgggggtcaagcttggagaggaagttggc
tacactatacgattcgaagatgttacaaatacaggtgtcactatgataaagtttttgact
gatggtgtgttactcagggaaatgatgaatgatcctcttttgacaaaatatagtgtcata
atgatagatgaggctcatgaaaggtctatctcaactgacattttattgggtctcctaaaa
aagatccaacgacgccgacctgagctgcgtctgatcatctcatccgccacaattcaagca
aaatcaatgtctgatttctttcagaccagcaaaaggcgtcgcagaccggaaggagaggag
cttggaccaaatatggagcctgctgtcctatcagttgagggtagagggtttaatgtacaa
attcattatgtggaggagcctgtcccggattatcttcgggcttctgtttcaacagtctta
ttaattcatgagaaggaaccaatgggagatattctggtatttcttactggtcaagatgat
attgatgctgctgtccagctgattaccgaagaagatcaaaaccgtggaagaaagtcatca
ggattgatggttttgcccctctactcaggacttccacgttctgagcaggagttggtgttc
actcctactcctagagggaagaggaaagttgtgatatcaaccaatatagcagagacatcc
ataactttggagggtgttgtatatgttgttgacagtgggttctcaaagcagcgtttctac
aacccgataacagatattgaaaatctggtagtggcgccaatatccaaggcatctgctcga
caaaggaccggtagggctggaagagttcggcctgggaaatgttacaggctatataccgaa
gagtattttgcaaaggaaatgtctgctgaggggatcccagagatacaaaggtcaaatctt
gttccctgtgtgattcagttaaaagccttgggaatagataatatcttgggctttgattgg
ccagcatctccatcttctgaagcaatggttcgagcgcttgaagtgctttattcacttgga
gtcctagatgatgatgccaaacttacttcaccgactggatttcaaattgctgagattcca
ttggatccaatgatctcaaaaatgatcttagcgtcaggtcaactggggtgttcagaagag
atgattactattgctgccactctctccattcaatctatctgggtttctggttggggatca
cagaaggaactggatgaagccaagttgaattttgctgctgctgagggtgaccacgtgagt
ttcttaaatgtctacaaaggatttcttcagtctggtaaatcttcgcagtggtgtcataag
aactttgtaaactaccaagccatgaaaaaggttctggaaattagagaacaactcagaaga
acggctcagagaataggcattgtcttgaaatcttgtgaaagagacacggtggtagtgagg
aaggcaattactaatgggttttttgctaatgcatgtcgtttagaagcatcaagtcacgat
gggaagtacaagactattagaggttctcaagaagtttatattcacccatcatctgtgtta
ttcagggttaatcccaagtgggtattataccattctcttgtctcaactgataagcaatac
atgcggaatgtgatttccatagatccttcttggctcacagaggcagctccacatttttac
caacaccagcgactcaagtcaatggttcactag
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