Entry |
|
Name |
|
KO |
|
Organism |
pdul Prunus dulcis (almond)
|
Pathway |
|
Brite |
KEGG Orthology (KO) [BR:pdul00001]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117626544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:pdul03019]
117626544
Messenger RNA biogenesis [BR:pdul03019]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
117626544
mRNA cycle factors
Common to processing body (P body) and stress granule
117626544
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
4:19961836..19969452
|
AA seq |
1012 aa
MITRMDKMSAPSSRERAQRLYDKVIELENRRRRSAQARIPSDPNAWQQIRENYEAIILED
HVFSEQHNVEYALWQLHYKRIEELRAHFSAATASAGSNSSQAVKGPARPDRITKIRLQFK
TFLSEATGFYHDLIVKIRAKYGLPLGYFSEDSENKIVMDKDGKKSTEMKKGLISCHRCLI
YLGDLARYKGLYGEGDSKTREYAAASSYYLQAASLWPSSGNPHHQLAILASYSGDELVAV
YRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQLPGNTNASAVKELPARLTSKGRGKAEA
IPASKDNNTEVSLVKEKASSTQETYKAFCIRFVRLNGILFTRTSLETFVEVLSVVSSGLC
ELLSSGAEELQNFGADSVENGLFIVRLVSILIFTVHNVKKESEGQTYAEIVQRAVVLQNA
FTAVFELMGHILERCVQLCDPSSSFLLPGILVFVEWLACCPDVAAGSDADEKQTKVRSKF
WMVCISFLNSISSTGPVSIDDDEDETCFNNMSRYEEGETENRLALWEDFELRGFIPLLPA
QTILDFSRKHSFGSDGHKEKGARVKRIVAAGKALANVIKVDQKAVYFDSKAKKFVIGFEP
PVQNDFVPTSYMGMATENDNLQENQAENTMKLGVAYPKPELTMEGDEEDEVIVFKPIVAE
KRPDVVNTTWAAYEGLVPGKNASPGDLKVNGTYVTAPFDNLRQQTAFSAGSQIPVSVGNG
IPQHLQSIQSHASKLSMEAGFGASSQLPVSVANSIPQNLQPTQSHALKLSTEEEISLAHG
LKSMGFMGNGYVLASEPVAVSVPFQQPVNGSTSGMVYSHTKAPEAMLPFKVDTMSSSGAI
ADGLTVKTSSNLPTGIRKNPVSRPVRHLGPPPGFSPVPPKNVNESIYGSDSMSENLLMDD
YSWLDGYQMPSSTKGNGLNSSINISSHSNPNRFINSNGLNGPVNFPFPGKLGPPMQLQGE
KQKSWQDFQMLDELKLHHEMQLQQQLVNGNQHLTPQPEQYQGQSVWTGRYFV |
NT seq |
3039 nt +upstreamnt +downstreamnt
atgattacacgtatggataaaatgtcagctccttcatcaagggagcgtgcccaacgcctc
tatgacaaggttattgaattggagaataggcgtaggaggtctgctcaagctcgaattccc
tcagatcccaatgcctggcaacagatacgggagaattatgaagcaataattctcgaggat
catgttttttctgagcagcacaatgttgagtatgctttgtggcagctgcattacaagcgt
attgaggaattgagagcacactttagtgctgctacggcttctgcaggttcaaactcatct
caggctgtgaagggccctgctcggcctgatcggattacaaaaataagattgcagtttaaa
acattcctttcagaggcaactggattttatcatgatttgatagtgaagatcagagcaaag
tatgggctccctcttgggtatttctctgaggattctgaaaataaaattgttatggacaag
gatggaaagaaatctactgaaatgaagaaaggcctgatatcgtgccaccgatgtttgatc
tacttgggtgatcttgcacgctacaaaggattgtatggggagggggactccaaaactcgt
gagtatgctgcagcctcaagttactacttgcaagctgcatctctctggccatcaagtggg
aatccccatcatcagcttgctattttggcatcctattcgggggatgagttggtggctgtt
tatcgatattttcgtagcctggcggtggatagtcccttttcaactgcaagggataacttg
attgttgcatttgagaagaatcgtcagagttactctcaactgcctgggaatactaatgct
tctgcagtcaaagagttgcctgcacgattgacaagcaaaggtagagggaaagcggaagca
atacctgcatctaaagataacaatacagaagtgagccttgttaaggaaaaagcatccagt
actcaggaaacttataaggctttttgcatacggtttgtccgtctaaatgggattcttttc
acacgtactagcctggagacatttgtagaagttctttctgtggtaagcagtggtttatgt
gagctcctgtcttctggagcagaggagttgcagaatttcggtgcagattctgttgagaat
ggacttttcattgttagacttgtctccatattgatattcacagttcacaatgtgaagaag
gaaagtgaaggtcagacatatgctgaaattgtacaacgtgctgtcgtactgcagaatgca
tttactgctgtctttgagttgatggggcacatcttagagagatgcgtccagttgtgtgat
ccttcttcaagtttcctgttaccgggtattctggtgtttgtagaatggttagcatgttgc
ccggatgttgcagctggaagcgatgcagatgaaaaacagactaaagttagatcaaagttc
tggatggtttgcatctccttcctgaatagtatctcatcaacagggccggtgtccatagat
gatgatgaagatgagacttgctttaataatatgagcagatatgaagaaggggaaactgag
aaccgtcttgctttgtgggaggattttgagttgagaggattcattccacttcttccagcg
caaactatattggacttctcaaggaagcattcttttggaagtgacggccacaaggaaaaa
ggggcccgtgttaaacggattgtggcggcaggcaaggctcttgcaaatgtgattaaggtt
gaccagaaagcagtatattttgattcgaaggcaaagaaatttgtcattggttttgagcct
ccagtgcaaaatgattttgttcctacctcctatatgggcatggctactgaaaatgataat
cttcaagaaaatcaagcagagaatacaatgaagttgggagttgcatatccaaagcctgag
ttaaccatggaaggggatgaggaagatgaagtaatagtttttaagccaatagtggctgag
aagcggcctgatgtggtaaacactacttgggcagcctatgagggcctggtgcctggtaaa
aatgcttctccaggtgatcttaaagttaatggcacttatgtcactgccccttttgataat
cttcgccagcaaaccgcttttagtgctggttcacaaatacctgtatctgttggtaatggt
ataccccaacatttgcaatcaattcagtcacatgcttccaagctgtcaatggaagctggt
tttggtgctagttcacaacttcctgtatcagttgctaatagcatcccccagaatttgcaa
ccaactcaatcacatgctttgaagttgtcaacagaggaagaaatatctcttgctcacggc
ttaaagagtatgggatttatggggaatgggtatgtacttgcatctgagcctgtggcagtt
tcagttccattccagcagccagtgaatggtagtactagtggtatggtctacagccacaca
aaagctccagaagctatgttgccgtttaaggttgatactatgtcatcttctggagcaatt
gctgacggtttgactgtaaagacatcatctaacctgcccacaggtatccgaaagaatcca
gtaagtcgacctgttaggcatcttggtccaccacctggttttagccctgttcctcccaaa
aatgtgaatgaatcgatttatggctccgactcaatgagtgagaatctactgatggacgat
tacagctggttggatggatatcagatgccatcttcaacaaaaggaaatgggctcaatagc
tccattaatatctcatctcattcaaatcccaatcgcttcattaacagcaatggcttgaat
gggccagtgaactttccctttcctggtaaactgggtccacctatgcaactccaaggcgaa
aaacagaaaagctggcaagattttcagatgctcgatgagctcaaactacaccatgaaatg
cagctgcagcaacaacttgtaaatggaaatcagcacttgactcctcagcctgagcaatat
caaggacagtctgtctggacaggccgttattttgtgtga |