Prunus dulcis (almond): 117626587
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Entry
117626587 CDS
T07328
Name
(RefSeq) exosome complex component RRP45A-like isoform X1
KO
K03678
exosome complex component RRP45
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117626587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117626587
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
117626587
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
117626587
NCBI-ProteinID:
XP_034214224
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Position
4:17797658..17802403
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AA seq
457 aa
AA seq
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MEQRLANTWRMSVNEKKFIETALLSDLRIDGRRPFDYRNLTIKFGKDEGSAEVQLGQTHV
MAFVTAQLIQPYRDRPNDGSLSIFTEFSPMADPSFEPGRPGESAVELGRVIDRGLRESRA
VDTESLCVLSGKLAWAIRVDLHILDNGGNLIDAANIAALAALLTFRRPECSVGGEDGQEV
IVHPPEEREPLHLIIHHLPIAVTFGFFSFESRVVIDPTHHEEAIMGGRMTATLNANGDVC
AIQKAGGEGVLQSVIMQCLRIASVKAGAMTEKIKKAVDSYNTERALRKIKRRTSSDPMDV
DRGASNTGLTQNSSVYHMERLKPVSEEGIANQSEDVEGETQLSDKRQTNKVNDAKNFIGG
PSSWDPYSKGVDSDFLKASLASHGMSMTTKKQNDPKGEETTSGAKPEEPPEDINPKPSPI
RAAETAEQTNGEKTLKDAVKPKNKRPRRKNRSSTGPS
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atggagcagagattagcaaacacatggcgcatgtcagtgaacgagaagaagttcattgag
accgctttactctccgacctccgaatcgatggccgtcgccccttcgactaccgtaacctc
accatcaagttcggcaaagacgagggctcggcggaggtccagcttggccaaacccatgta
atggccttcgtcacggcccagcttatccagccttaccgggataggccaaatgacggctct
ctctccatcttcaccgagttctctccaatggccgacccctccttcgagcctggccgcccc
ggcgagtctgctgttgagctgggccgcgtaattgaccgaggtcttcgggaaagcagggcg
gttgatacagaatcgctttgtgttctttcggggaagttagcatgggccatccgtgttgac
ctccatattttagataatggaggaaaccttattgatgctgctaatattgcggcattggct
gctttgttgacttttcggaggcctgagtgctccgtggggggagaagatggtcaggaagtg
attgtgcatccacctgaggagagggagccacttcatctaatcatacaccatctacctata
gcagtaacctttggattcttcagtttcgagagcagagtggtgattgatccaacccatcat
gaagaggctattatggggggacgaatgactgcaacacttaatgcaaatggagatgtttgt
gccattcaaaaagctggaggggagggtgtcttgcagagtgttataatgcaatgtttgcga
attgcctctgtcaaggctggtgctatgacagaaaagataaagaaggcggttgattcatac
aacacagaaagagcattacgcaagatcaagcgccgtacatcttctgaccccatggatgtt
gatagaggtgcttctaatacagggttgacacaaaactcttctgtttatcatatggagaga
ttaaagccggtttctgaggaaggcattgctaatcaaagtgaggatgttgaaggtgaaact
caattatcagacaaaaggcaaactaacaaggttaatgatgcgaagaattttattgggggg
ccctcaagttgggatccgtactcaaagggtgttgattcggatttcttaaaagcttctcta
gcttcccatggaatgtcaatgactactaagaaacaaaacgacccaaaaggtgaggaaaca
accagcggagccaagccagaagaacctcctgaagatattaatccaaaaccttcacccatt
agggcagctgaaactgcagaacaaacaaatggagagaaaaccttgaaggatgctgtgaag
cccaaaaacaaaagacccaggagaaagaatcgctcctctacaggtccaagctag
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