Prunus dulcis (almond): 117626762
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Entry
117626762 CDS
T07328
Name
(RefSeq) serine/arginine-rich splicing factor SR45 isoform X1
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03013
Nucleocytoplasmic transport
pdul03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117626762
03015 mRNA surveillance pathway
117626762
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117626762
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117626762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
HU-CCDC81_euk_1
Motif
Other DBs
NCBI-GeneID:
117626762
NCBI-ProteinID:
XP_034214486
LinkDB
All DBs
Position
4:complement(8274892..8280210)
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AA seq
399 aa
AA seq
DB search
MAKPSRARRSPLSGSGSDSSSRSRSRSRSFSGTDSRSSSHSRSRSRSRSFSSSSPSRSGS
SRSRSPPSKKSPEVARRGRSPPPQAKKASPPQRKASPIRESLILHIDQLTRNVHEGHLRE
IFCNFGDVVKVELAMDRAVNLPKGFGYVEFKTRADAEKAQLYMDGAQIDGNVIRARFTLP
QRQKGSPPPKPVSAAPKRDAVKTDGVNADKDGPKRPREASPRRRPPLSPRRRSPVARRGG
SPRRLPDSPPRRRAGSPARRGDTSPRRRLASPSRGRSGSPPPRRRSPVRRIRGSPIRRRS
PFPPRRRSPPRRVRSPPRRSPINRRRSRSPNRRLARSRSRSISPRRGRGPATRRGRSSSY
SGSPSPRKVPRKISRSPRRSLRRRSSSKSSSSSSPPRKP
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagccaagccgagcccgtcgctcgccactttcaggctccggttctgactcatcg
tcacgctcccgctcgcgttcgcgctccttctcaggcaccgactcgcgctccagctcgcat
tctcgctctcgatctcgctccaggtccttctcttcctcctctccgtcccggagtggcagc
tctcgtagccgaagccctccctccaaaaaaagtcctgaagttgctagacgaggtcgttct
ccaccaccacaagctaaaaaggcatctccaccccaaaggaaagcttctccaattcgcgag
tcacttattcttcacattgaccagcttacgaggaatgtgcatgaaggccatttacgagaa
atattttgtaactttggtgatgttgtcaaagtggaactggcaatggatcgtgctgttaat
cttccaaaaggatttggatatgttgagttcaagacgagagcagatgctgaaaaagcacag
ttatatatggatggcgctcaaattgatggtaatgtaatccgagcgaggtttacattacct
cagcgtcagaaggggtcaccgccacctaagcctgtttccgctgctccaaagagagatgct
gtgaaaactgatggtgtcaatgctgacaaggatggaccgaagcgaccaagggaagcttct
cctcgtcggaggccacctctctcaccacgaaggagatcccctgtagctcgcagaggtgga
tctccaagacgactgccagattctccaccacgtcgtcgtgctggctctcctgctcgtcgt
ggtgatacttctccaaggaggaggcttgcatctccatctagaggtcgttctggatctccg
ccaccaaggcgacgttcccctgttagaaggatacgtggcagtcccattcgtagacgctct
ccttttcctccaaggcgccgttcacctcctagacgggttcgtagtcctcccagaaggtct
ccaatcaatcgtaggcgtagccggtctcctaatcgtaggcttgctcgatcacgatcaagg
tcaatctcgccgcggagaggtcgaggaccagctactagacgtgggaggtcgtcatcatac
tctggatcacctagtccacggaaggtaccccgaaagatatctcgtagtccaagaaggtct
ttgaggagaagaagcagtagcaagagcagcagcagcagttcacctcctcgtaagccatag
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