Prunus dulcis (almond): 117626910
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Entry
117626910 CDS
T07328
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03440
Homologous recombination
pdul03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117626910
03450 Non-homologous end-joining
117626910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdul03032
]
117626910
03400 DNA repair and recombination proteins [BR:
pdul03400
]
117626910
DNA replication proteins [BR:
pdul03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
117626910
DNA repair and recombination proteins [BR:
pdul03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
117626910
BRCA1-C complex
117626910
NHEJ (non-homologous end-joining)
MRX complex
117626910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_21
SMC_N
SbcC_Walker_B
AAA_15
AAA_29
Rad50_zn_hook
AAA_22
AAA_16
ABC_tran
Motif
Other DBs
NCBI-GeneID:
117626910
NCBI-ProteinID:
XP_034214604
LinkDB
All DBs
Position
1:13607788..13625361
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKHVITFFKPLTLIVGPNGAGKTTIIECLKLSCSGELPPNAR
SGHSFIHDPKVAGETETKAQIKLRFRTAAGKDVVCIRSFQLTQKASKMEFKAIDSVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDEANWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKTYKLKLENLQTLKDVAYKLRESISKDQEKTESVKS
QMQELEGSIRDVDTKIRYTEATLKDLRELQDQISMKTAVRSTLFKEQQKKYADLAEENED
TDEELKEWKTKFEERIAILETKISKLEREMEDTGTKSGVLKKTLEKSIWEISKLQTEAEV
HRSSKSERDSIIQNFFTRHNLGSLPNPPFDDEVALNLTNRIKSRLLELEKDLQDKKKSNE
FELKTAWDRYMDANGRWNNNEAQKKAKKDIKNGLLKRIKEKENERDSFELQVSNVDLSHI
DEKEKNMSIEVERKKNQLARREFESTIIQKESELYSIGQMIKVADREKSILDLDSEDRVK
LSIKKTELENLKKKHRKIIDEYKDRIRGMLKGRLPPEKDFNKEITQVLRAATKEFDDLSA
KSRDAEKEVNMLEMRVQEVNNNLSKHRKDMDSKRRYIESKLQALDQQSFTADSYPKVLDS
AKEKRDVEKRKYNFADGMRQMFDPFERVARANHICPCCERPFSLKEEDEFVKKQRMNSAS
SAEKIKVLAAESLSADSFFQQLDKLRMVYEEYVNIGKETIPNAEKELRDLTEEMEQKSQA
LDDVLAVSAQVKADKDSIQALVQPIETADRLFQEIQTLQQQVDELVYKLEYQGQGAKSLK
DIESELNGLRSREDNLRDELEKLREERRYMENDLADTRIRWHSLKEEKGKVANILRDVER
VEAELDRLTEEKSQVDLDEKHLEEAHGPLSREKDELLRDYNNLKVKLDREYEEQAEKKGK
YQQEVVALLALISKIKQYNDEKKGEKLQELQVNKCLSESQLQSCDTRKQEISTELDKSKE
LKRNQDQLKRNIEDNLNYRKTKAEVEELSHEIESLEDRILKIGGKSKIEAEFGKLSQERE
RLLSELNIHRGTMSVYQKNISRDISDLKQAQYKEIDKRYFDQLIQLKTTEMANKDLDRYY
NALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDYICIHSDSEGAGTRSYSYKVLMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNADSLAAALH
RIMEDRKGQENFQLIVITHDERFAQLIGQRQHAEKYYRVAKDDHQHSIIEAQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagtacggtggacaagatgctgataaagggaattcggagcttcgatccggagaacaag
cacgtcatcaccttcttcaagcccttaaccctaatcgtcggcccaaacggcgccggaaaa
accaccattatcgagtgcttgaagctctcttgctccggcgagttgccccccaatgctagg
tctggccacagcttcatccatgacccgaaagttgccggcgaaaccgagaccaaagcccag
attaagcttcgattcagaaccgcagcgggtaaagatgtggtgtgcattaggtcatttcag
cttacgcagaaagcctcgaaaatggaattcaaagccatcgacagtgtccttcaaaccatt
aatccccacaccggagagaaagtttgccttagctatagatgtgctgatatggatagggaa
atccctgctttaatgggtgtgtcaaaggctattttggaaaatgttatatttgtgcaccaa
gatgaagccaattggcctttgcaagatccttccacattgaagaaaaaatttgatgatatc
ttctctgctacccgatataccaaggcgttggaggtgataaaaaaacttcacaaggatcaa
gctcaagaaataaagacctacaagctaaaattggagaatcttcagaccttgaaagatgtt
gcatataagcttcgggagagtatttctaaagaccaagaaaaaacagaatctgtgaaaagt
cagatgcaagaattggagggaagcatcagagatgtggatactaaaattcgttatactgaa
gcaacactgaaagatttgcgggagcttcaggaccagatatcgatgaagactgctgtaaga
agcactctctttaaggagcagcagaaaaagtacgcagatcttgctgaggagaacgaagac
actgatgaagaattgaaggaatggaaaaccaagtttgaagaaaggattgcaattttggaa
actaaaattagcaagttagagagggaaatggaggacacagggaccaaaagtggagtcctt
aagaagacactagagaaatctatatgggagattagcaagcttcaaaccgaagctgaagtt
cataggtcctcaaagagcgagagagattctatcattcaaaacttttttacaaggcacaat
ttaggttctcttcccaatcctccctttgatgatgaagttgctttgaacctcacaaataga
ataaagtcaaggttacttgagctcgaaaaggatttgcaagataagaagaaatcaaacgaa
ttcgaactcaagacagcatgggaccgctacatggatgcaaatggtcgttggaataataat
gaagctcaaaagaaagctaaaaaagacataaagaatggccttttaaaacgcattaaggaa
aaggaaaatgaacgtgattcttttgaacttcaagtttcaaatgttgatctttctcacatt
gatgagaaagagaaaaacatgtcgattgaggttgagagaaagaagaaccagcttgctaga
cgagaatttgaatcaacaataattcaaaaggaaagtgagctgtatagcattgggcaaatg
attaaggttgctgatcgagaaaaaagcattctggatcttgattcggaggacagagtaaag
ctgtctataaagaagacagaattggagaatctaaaaaagaaacatagaaagataattgat
gaatacaaggacagaattagaggaatgttaaaggggaggcttcctcctgagaaggatttc
aacaaggaaatcactcaagtcttgagggctgctaccaaggagtttgatgacttgagtgcc
aaatctcgcgatgcagagaaggaggtgaatatgctggaaatgagagtacaagaagttaac
aataacctctccaagcatcgtaaagatatggactcaaaaaggagatatatcgaatctaaa
cttcaggccctagatcagcaatcatttactgctgattcctatcccaaagttttggattca
gctaaggagaaaagagatgttgagaaaaggaaatacaactttgcagatggtatgcgacaa
atgtttgatccttttgaaagagttgcccgtgccaatcatatttgcccttgctgtgaacgc
cccttctctctcaaagaggaagacgaatttgttaaaaagcaaagaatgaattctgcaagt
tctgctgagaaaataaaagtgctggcagcagagtccttgagtgctgactcgttttttcag
caattggacaagctccgcatggtttatgaagaatatgttaacattggaaaggaaacaatc
cctaatgcagagaaagaactacgtgaccttactgaagagatggaacaaaagtctcaggcc
ctcgatgatgtgctagctgtttcagctcaagtgaaggctgataaggactcaattcaggcc
ctggtgcaacccattgaaactgctgacagactatttcaagaaatacaaacattgcagcag
caagttgatgagttggtgtataagcttgaatatcaagggcagggtgcaaaatccctgaaa
gatattgaatcggagctgaatggtctgcgtagtagagaggataatttgcgtgatgaacta
gagaagttaagggaagaacgaaggtacatggaaaatgatttagcagacactagaatacgg
tggcacagtctaaaggaagaaaaaggcaaggtagctaatatcttgcgtgatgtcgaaagg
gtagaagcagagttggatcgtttgactgaggaaaagagtcaagttgatcttgatgaaaag
catttggaagaggctcatggccctttatcaagggagaaagatgaattacttcgtgactac
aataacttaaaagttaaacttgatcgcgaatatgaggagcaagctgagaaaaaaggaaaa
taccagcaggaagttgtggcactacttgcgcttatttctaaaattaaacagtataatgat
gaaaagaaaggagagaagttgcaggaactgcaagtaaataaatgtctatcagaatctcaa
cttcaaagttgtgatactagaaagcaggaaatttcaactgaattagacaaaagcaaagaa
ttaaagcggaatcaagatcagttaaaacgaaatattgaggataatttgaattacaggaaa
acaaaagctgaagtagaggaactttcccatgagattgaatcactggaagacagaattctg
aagattggtgggaaatccaaaattgaagctgaatttggaaagctctcacaggagagggag
aggcttctttcagagttaaacattcatcgtggaaccatgtctgtttaccagaaaaatatt
tcaagggatataagtgatctcaaacaggcacaatacaaggaaattgacaagcggtacttt
gatcagctaatccagctaaagacaactgagatggcaaacaaggacctggacagatactac
aatgcgcttgacaaagcactgatgcgcttccacaccatgaaaatggaggaaataaataaa
attataagggagttgtggcagcaaacatacagaggacaagatatagactacatatgtata
cattcagattctgaaggtgctgggactcgttcttatagctacaaggttctcatgcagacc
ggtgatgcagagctcgaaatgagaggaagatgcagtgctggtcagaaggtcctcgcttcc
cttatcataaggttggctttagctgaaactttctgcctcaactgtggaatactagcacta
gacgaaccgactacaaatttggatggcccaaatgcagacagtcttgctgctgctctccat
agaattatggaggaccggaagggccaggaaaactttcagctgattgtaattactcatgat
gagcgttttgctcaactaattggccaacgccagcatgcagagaaatattatcgggtggca
aaggacgatcaccagcatagcataattgaagcccaggagatttttgattga
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integrated database retrieval system
