Prunus dulcis (almond): 117626971
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Entry
117626971 CDS
T07328
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117626971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117626971
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
117626971
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_11
TPR_17
TPR_16
TPR_14
TPR_8
TPR_19
TPR_12
TPR_CcmH_CycH
TPR_9
TPR_15
TPR_20
BTAD
TPR_7
Clathrin-link
TPR_10
Motif
Other DBs
NCBI-GeneID:
117626971
NCBI-ProteinID:
XP_034214713
LinkDB
All DBs
Position
5:complement(35534..44103)
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AA seq
1179 aa
AA seq
DB search
MQETEQEKECELRRLEECIEAHPDDPSLRFELGVLLWEEWDTKEKAAEQFVVAAKLKPEI
EKGGAFRYLGIYYAGLDSQSHSQRALKCFQKAVSLNPDDSLSGEALCDLLDQQGKESLEV
AVCREASQKSPRAFWAFQRLGYLLLHQNKCSEAVHSLQHAIRGYPTSPHLWEALGLAYQR
LGRFTAALKSYGRAIELEGTRIFALLESGNIFLMLGSFRQGVEAFQQALEISPKSVSAHY
GLASGLLCLAKECNNLGAYRWGATVLEEASKVAWMCTQLAGNMSSIWKLHGDIQLTYAKC
YPWMEEDHSLEFDVEAFDNSILSWKRTCCLAAKTARCSYQRALHLSPWQANIYADIAVTS
DLVDSFDNSTGHELSAWQPSEKMALGALLLEGDNSEFWVALGCLSDHNALKQHALIRGLH
LNVSLAVAWAYLGKLYRKQGEKQFARQAFDCARSIDPSLALPWAGMSADFHARESAAGEA
YESCLRAVQIFPLAEFQMGLAKLALGSGNLSSSQVFGAIRQAMQRAPHYPECHNLTGLVY
EAQSNYRSAAASYRLARCAITNLSGSDRKSHMTDISINLARSLSRAGNALDALQECEDLK
KEGLLDVEGLQIYAFSLWQLGNTELALSMARNLAVSVSTMEQTSAAASVVFICRFLYHIS
GLDSAINSILEMPKQLFQSSKISFIVSAIHALDRSNRLESVVSSSRYYLKSHEEITGMHF
LIALGKLIKHGSEHRLGYQSGIDHLRKALHMYPNSSLLRNLLGYLLLCSEEWNDTHIATR
CCDIDATNPSKGSLKSAYEILGAGAVACYAVGNCSPKFSYPTCTYQCLNEPGAIQQLQKG
LRREPWNQNIRYLLVLNLLQKAREERFPCHLCIILERLISVALSDEVYHNTGMSYEYKKF
QLLLCASEICLQGGNLTGCINHAKNASSIMLPDDCLFFAHLLLLRAYALECDTVNLQKEY
IRCLELKTDHHIGWICLKFIEYRYELQSDLDILESSFKECSKERMNSWNRWRALFILVQG
LISIWSQDIISAEQFFAQACSLAGDESSLLLCHGATCMELSRQGCWQFLSLAVRSLTKAQ
EGPLIPLPIVSALLAQAAGSLGSKEKWEKNLRLEWPTWPQEMRPAELFFQMHLLARQSKA
SSDSSRVEFCQSPEKWVLRAIHTNPSCMRYWKVLQKHVE
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaacggaacaagaaaaggaatgtgagctgcgacgcttggaggagtgtatagag
gcccatccagatgatccctcccttcgcttcgaactcggagtgttgttgtgggaggagtgg
gataccaaggaaaaagcggcagaacaattcgtagtagcagcgaaattgaagcctgagatt
gagaagggaggggcattcagatatctagggatttattacgcaggtctagactcccagtcc
catagccagagagctcttaagtgcttccagaaagccgtctctctcaatcctgatgactcc
ctctctggggaagccttgtgtgatttgttggaccagcaaggaaaggagagcttggaggtg
gctgtgtgccgggaggcttcccaaaaatcccccagggccttttgggctttccaaagactc
ggttacttgctactccatcaaaataaatgctctgaagctgtccacagtcttcaacatgcc
attcgaggctatcctacctctccacatctctgggaggctcttggccttgcctaccagcga
ctaggcaggttcactgctgctctcaagtcttatggaagagccattgaattggagggtaca
agaatctttgctttgcttgaaagcggaaacatctttttgatgcttggttcctttcgacag
ggagttgaggcatttcagcaagcattagagatttctcccaaaagtgtctctgcgcactat
gggcttgcttctgggctgctgtgtttggcaaaggaatgcaataatttgggagcatataga
tggggtgctacagtgctagaggaggcatctaaagttgcctggatgtgtactcaattagct
ggaaatatgtcatctatttggaagctgcatggtgatatacaacttacttatgcaaaatgt
tatccatggatggaggaggaccacagtttagagtttgatgtggaagcctttgataattcc
atcctttcatggaagcgtacctgctgtttggctgcgaaaactgccaggtgctcttatcag
cgggctttgcacttatccccatggcaagctaatatatatgctgacattgcagtaacttca
gatcttgtagactcttttgataacagtactggacatgaattaagtgcttggcagccatcc
gagaagatggctttgggagccctgttacttgagggtgacaattctgagttttgggtagca
ttgggatgtttgtctgatcataatgcattgaaacaacatgctctaatcaggggattgcat
ttgaatgtatctctagctgttgcgtgggcatacttagggaagctgtacagaaaacaaggt
gagaagcaatttgcaaggcaagcatttgattgtgctagaagtatagatccttcactcgcg
ttaccatgggctggcatgtcagctgattttcatgctagagagtctgcagctggagaagct
tatgagagctgcttacgagctgtgcagatatttcctcttgccgaattccaaatgggtctt
gcaaaacttgctcttggttcagggaatctttcatcttcgcaggtctttggagccatcaga
caggccatgcagcgtgcacctcactatcctgaatgccataatttaactgggctagtctat
gaggcacaatccaattatcggtctgccgctgcttcttatagactagcacgctgtgcaatc
accaatttgtcaggcagtgatagaaaatctcatatgacggatatatcaatcaatttggct
cgatcacttagtagggcagggaatgctctagatgctttgcaggaatgtgaagatttgaag
aaagaagggttgcttgatgtggaaggtttgcaaatatatgctttctccttgtggcaactt
ggtaatactgaactggccctctctatggcaagaaatctggcagtgagtgtctctacaatg
gaacaaacatctgcagctgcctctgttgtttttatctgtagattcctgtatcatatttct
ggactggattccgcaatcaatagcattctggagatgccaaagcaactgtttcagagttca
aagatcagtttcatagtatctgctattcatgctctagatcgaagtaatcggcttgagtct
gttgtgtcaagcagtcgttactatcttaaatctcatgaagagataactggaatgcacttt
ttgatagcacttggtaaactaataaaacatggatcagaacaccgtttgggatatcaaagt
ggaattgatcaccttaggaaagctcttcacatgtatcctaacagtagcttgttaaggaac
cttcttggttatcttttgttgtgcagtgaagaatggaatgatacccacattgcaactagg
tgttgcgacatagacgctactaatccaagtaaaggcagtttaaaatcagcatatgaaatt
cttggtgctggagcagtcgcttgctatgctgttggcaattgcagtcctaagttctcttac
ccaacatgcacataccagtgcctgaatgaacctggagccatccagcaactacagaaaggt
ttacgcagagaaccatggaaccagaacataagatatctgcttgttctcaatttactgcag
aaggcacgtgaagagagatttccttgccatctttgtattatacttgagcggctaataagt
gtagctctttctgatgaagtttatcataatacgggcatgtcttatgaatataagaaattc
cagcttctactttgtgcttcggagatctgtttgcaaggtggtaatctgactggctgtatc
aaccatgccaaaaatgcttcatcgattatgcttcccgatgattgtcttttctttgcacac
ttgctattactccgtgcctatgccttagaatgtgacactgtaaaccttcaaaaagagtat
ataagatgcttggaactcaagacagatcatcatattggttggatatgtctaaagttcatc
gaatatcgttatgaattgcaaagtgatttggatattttagagtctagcttcaaagaatgc
tcaaaggagcgaatgaattcatggaataggtggagggctctattcattctggtgcaaggc
ttgatatctatatggagccaggacattatttctgctgaacagttttttgcacaagcttgt
tcattggcgggtgatgagagcagcctcctgctttgtcatggtgccacctgtatggagctt
tctcgccaggggtgttggcagtttttatcacttgctgtacggagtctcactaaagctcaa
gaaggacctctcattcccttaccgattgtctcagcattgctagctcaagcagctggaagt
cttggttcaaaagagaagtgggagaaaaacctccgtcttgaatggcctacttggccccaa
gaaatgaggcctgcagagctgttctttcagatgcatttgcttgcaagacagtcgaaagct
agttcagactcttccagagttgagttttgtcagagtccggagaagtgggttcttcgagca
attcacacgaacccttcttgtatgagatattggaaggttttgcagaagcacgtggaatga
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integrated database retrieval system
