Prunus dulcis (almond): 117627130
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Entry
117627130 CDS
T07328
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03013
Nucleocytoplasmic transport
pdul03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117627130
03015 mRNA surveillance pathway
117627130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117627130
Enzymes [BR:
pdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117627130
5.6.2.5 RNA 5'-3' helicase
117627130
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117627130
mRNA cycle factors
Common to processing body (P body) and stress granule
117627130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NAT10_TcmA_helicase
NPHP3_N
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
Ribosomal_S13_N
AAA_25
AAA
Motif
Other DBs
NCBI-GeneID:
117627130
NCBI-ProteinID:
XP_034214949
LinkDB
All DBs
Position
5:4992216..5007480
Genome browser
AA seq
1274 aa
AA seq
DB search
MDSQPNNLFETASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLSDPT
DRDRGGGGVGSDHQSDASPVSAAPGSATKARAGGSGSSGGNNQVVDVLAGGMSVLNFEDT
GDDDNYEYGKGDFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRA
KHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMN
WDLSQWCPLIDDRCFLQWLVKVPSEQEQLRARQISAQQINKVEELWKTNPDASLEDLEKP
GVDDEPQPVVLKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTIRWDIGLNKKRIA
YFVFPKEDNELRLVPGDELRLRYSGDAAHPAWQSVGHVIKLTAQEEVALELRASQGVPVD
VNHGFSVDFVWKSTSFDRMQGAMKAFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFG
APGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSN
VAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSEKSELHKLQQLKD
EQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLANFRFRQVLIDESTQAT
EPECLIPLVLGAKQVVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQY
RMHPALSEFPSNSFYEGTLQNGVTINERQSSGIDFPWPVPNRPMFFYVQMGQEEISASGT
SYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIE
VASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQ
PLWNSLLTHYKEHECLVEGPLNNLKQSMVQFPKPKKIYNDRRLFFGGGPGVIPNDNYGSI
ASSGQSVDRRSTRGSFLPPGPPNGAHKPGVHPAGYPMPRAPLSPFHGGPLSQPYAIPTRG
AVHGPVGAVPHVPQPGSRGFGAGRGNAGAPIGSHLPHQQGTQQNVGNLGSTFNFPALENP
NSQPSVGGPLSQPGFVNNMPQGPSQTFRDGFSMAGMSQEFLGDDFKSQGSHVPYNVADFS
TQASQSGYAVDYVTQGAQGGFPGNFMNQNSQAGYSRFGTGNDFMSQDYMPHGSQGLFTQV
GFNDPSQDDASQNHYGVANANQLQSQGFMNSLYSQPFAHYNTQPMNLQAPQQQQQQQPPQ
QGQSSQNQKIHYNG
NT seq
3825 nt
NT seq
+upstream
nt +downstream
nt
atggattcgcagccaaacaacctctttgaaacggcgtcgcagccggatacgggtaacgac
gcctacaccttcctcgaattcaacacccaaggcgaggactttgactacccggagtttcgt
gacccgattcggtcacctgtggcctggcccacgccgtccgattctttatcagaccctaca
gaccgcgaccgtggcggtggaggagtcgggtcggaccaccagtctgatgcgtcaccggtt
tcagctgccccgggcagcgccacgaaggccagggcaggtgggtcgggcagtagcggcggc
aataatcaggtggttgacgtgctagcgggtgggatgagtgtcctcaactttgaggacact
ggggatgatgataactacgagtacggcaaaggggatttcacagaacatgcgtgccggtac
tgcggggtgtccaacccggcgtgcgttgtgaggtgtaacgtgccttcatgtcgaaaatgg
ttctgtaattcgagggggaacacgtccggctctcatattgtgaatcacctggttcgagca
aaacacaaggaagtctgtcttcataaagatagtccattgggagaaacgatcctagaatgc
tacaattgtggatgtcgtaatgtattccttcttggatttatttcagccaagacagagagt
gttgttgttcttctttgtagggaaccctgtttaagtgttaatgcattgaaggatatgaac
tgggatctgagccagtggtgtcccctgattgatgataggtgtttcttgcagtggcttgtt
aaggtcccatctgaacaggagcagttaagggcgcgccagattagtgctcaacaaataaat
aaggtagaagaactatggaagaccaatcctgatgcttccctagaagatcttgagaagcct
ggtgtggatgatgaaccccaacctgtggtcttgaagtatgaagatgcttaccagtatcaa
aatgtgtttgcaccacttattaaacttgaagctgactatgataaaatgatgaaagaatct
caaagcaaagacaatgtcacgattcggtgggacattggtctaaacaagaagcgtattgca
tattttgtttttccaaaggaagataatgagttgaggcttgtacctggtgatgagctgcgg
cttcgttattctggagatgcggctcatccagcatggcagtcagtaggacatgtgatcaag
ttaactgcacaagaggaggtcgcacttgaacttcgtgccagtcagggagttccagttgat
gtgaaccatggcttcagtgttgacttcgtttggaagagtacaagttttgatcggatgcag
ggagccatgaaggcttttgcagtggatgagacaagtgttagtggatatatctaccatcat
ttattaggccatgaagtagaggtccaaatggtccgtaatacattgcctcgtcgttttggt
gcgcctggtcttccggagctcaatgcatctcaagtttttgctgtgaagagtgtcctccag
aagcctataagtttgattcagggtccacctggcacaggaaaaactgttacttctgcagca
attgtgtatcacatggctaaacaaggccagggacaggttttggtttgtgctcctagtaat
gtggctgtagaccaactagctgagaagataagtgcaactgggttgaaggttgttagactt
tgtgcgaaatcaagggaagctgtaagttctcctgttgagcatttaaccctccactaccag
gttcgtcatcttgacacgtcagaaaagagtgaacttcacaagttacaacaattgaaggat
gagcaaggagaattgtctagtagtgatgagaagaaatataaggcactgaagcgggcaacc
gagagggagatttctcagagcgctgatgtcatttgttgcacatgtgttggcgctggagat
cctcgattggcaaattttaggttccgtcaggtactgattgatgagtctactcaggcaaca
gaacctgaatgccttattcctttggttcttggggcaaagcaggttgttcttgttggtgat
cactgccagcttggtccagtcattatgtgcaagaaagcagctcgtgctgggcttgcccag
tctctttttgaacgcctcgttttacttggtgtgaaaccaattagattgcaggttcaatac
agaatgcatccagccttgtcagagtttccatctaacagcttctacgagggcacacttcaa
aatggagtgaccatcaatgaaaggcaatcatcaggcattgattttccttggccagttccc
aatcgtcccatgttcttttatgtacagatggggcaagaggagataagtgctagtggaaca
tcctatctgaacagaactgaggctgctaacgttgaaaagattgtcacaacattcttaagg
agtggtgtagtccctagtcagattggggtgataacaccatatgagggacaacgagcttat
attgtgaactatatgtcaagaaatggtgctctcagacagcaactttataaggaaattgag
gttgcaagtgtggattcatttcaaggaagagaaaaagattatatcatcctttcatgtgtt
aggagtaatgagcatcagggtatcggattccttaatgatcctcgccgtctcaatgttgct
ctaacacgtgctcgatatggtattgtcattcttggaaaccctaaagttctaagtaagcag
ccactgtggaatagcctactgacacactacaaggaacacgagtgcttggttgaggggcct
ctaaataacctgaagcagagtatggttcaatttccaaagcccaaaaagatctataatgac
cggcggctattctttggtggtggtcctggagttatcccaaatgataattatgggtctatt
gcctcatctggccaaagtgtggacagaagaagtactcgtggttcgttcttacctcctggc
ccacccaatggtgcacataagcctggggtacatcctgctggatatccaatgcctcgggca
cctctttcaccatttcatggtggtcccctttctcaaccatatgctattccaactcgtgga
gccgtgcatggaccagttggagccgttcctcatgtccctcaacctggaagtcgaggtttt
ggggctgggcgtggaaatgcaggtgctccaattggcagtcacctccctcaccaacaaggc
acacagcagaacgttggaaatctggggtctacattcaactttcctgcccttgaaaatcca
aatagccagccatctgtgggtggcccattatctcaacctggatttgtcaataatatgcca
caagggccaagccaaacatttcgtgatggattttccatggcgggcatgtctcaggaattc
ttgggtgatgactttaaaagtcagggatcacatgttccttataatgttgctgacttctcc
actcaggcttctcaaagtggatatgctgttgattacgttactcaaggtgcacaaggtggg
tttccagggaactttatgaaccagaattctcaagctggatattctcgatttggtacaggg
aatgacttcatgtctcaggactacatgcctcacggatcacaaggtctatttactcaagtg
ggctttaatgacccatctcaggatgatgcatcacagaaccactatggtgtggccaatgcc
aatcaacttcagtctcagggatttatgaattctctgtactctcagccttttgcccattac
aacacacagccaatgaacttgcaggccccacaacagcagcagcagcagcagccacctcag
cagggtcagagctcccaaaatcagaaaatccactacaatggttaa
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integrated database retrieval system
