Prunus dulcis (almond): 117627467
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Entry
117627467 CDS
T07328
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117627467
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117627467
03012 Translation factors [BR:
pdul03012
]
117627467
Enzymes [BR:
pdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117627467
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
117627467
Translation factors [BR:
pdul03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
117627467
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
dsrm
AAA_22
AAA_19
T2SSE
nSTAND3
ATPase
NACHT
Dicer_dimer
AAA_30
AAA_16
PhoH
Myosin_head
Motif
Other DBs
NCBI-GeneID:
117627467
NCBI-ProteinID:
XP_034215477
LinkDB
All DBs
Position
5:17266444..17275936
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AA seq
1230 aa
AA seq
DB search
MPYSALFEGYIIRTTAMSLKPTTASSPILASLRRTHNHRRHHIASVRPSFFGCTMRNSRY
HTHCLARSQNWNACNYLPRHVGPVGEVTCLASSRAVEADWKQRQLRSTAVPFLYQQNLGY
GRFAYQDASASEDSDYERGSSQRQSGGSTLENIDEWRWKLTMLLRNKDEQEVVSRERKDR
RDFEHLSELANRMGLYSRQYSKVVVFSKVPQPNYRPDLDDKRPQREVVLPFGLHREVDAH
LKAYVSQKPMKTGNLSEFSFSRSSSSGSMVNDGGPYEQEEPSIQNSDAMEKILLRKSLQL
RNRQQHWQESPEGQKMLELRRSLPAYKEKDALLKAISENQVIVVSGETGCGKTTQLPQYI
LESEIEAAQGTACSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGVKGRDTRL
LFCTTGILLRRLLVDRKLRGVTHVIVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSA
TLNAELFSSYFGGAPMIHIPGFTYPVRAHFLENILEMTRYQLNEYNQIDDYGQEKAWKMQ
KQAPGSKKRKSQIASTVGEVLEAADFREYSPRTRESLSCWNPDSIGFNLIEHLLCHIVRK
ERPGAILVFMTGWDDINSLKDQLQSHPLLGDPSRVLLLACHGSMPSSEQRLIFDKPEDEI
RKIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAASRQRRGRAG
RVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSKALQAPEP
LSVQNAVEYLKIIGALDDNEDLTVLGRHLSMLPVEPKLGKMLILGAIFNCLDPVMTVVAG
LSMRDPFLMPFDKKDLAESAKAQFSARDNSDHLALVRAYDGWKNAERVQSGYEYCWRNFL
SAQTLKSIDSLRKQFFFLLKDTGLVDHHTETCNTWSHDEHLVRAVICAGLFPGICSVVNK
EKSIALKTMEDGQVMLYSNSVNAGVPKIPYPWLVFNEKVKVNSVFLRDSTGVSDSVLLLF
GGNISRGGLDGHLKMLGGYLEFFMNPALANTYIFLKGELGELIHNKLLNPKLDMQSHTHL
LSALRLLVSEDQCEGRFVFGRKVPVPSKKATKEIKPGALTVGDKGGPNNNSKNQLQTLLV
RAGHDAPTYKTKQLKNNQFCSTVIFNGLNFVGQPCNSKKQAEKDAAAEAVLWLKGERHSS
STDIDHMSMLLKKSKKTSQKRTSFDSAKWG
NT seq
3693 nt
NT seq
+upstream
nt +downstream
nt
atgccctactcagccctctttgagggctatataataagaacaaccgccatgtctctcaaa
ccgaccaccgcctcatcccccattttggcctctttgcgtaggacccacaaccaccgccgc
caccacatagcttcagtaaggccgtcttttttcggttgcaccatgaggaacagccgttac
cacacccactgccttgcccggtcgcagaattggaatgcgtgtaattatctgccgcgtcac
gtggggccagtgggggaagtcacgtgcctggcctcgtcgcgggccgtggaggctgattgg
aagcagaggcagctgaggagtacggcggtgccctttttgtaccagcagaacttgggttat
ggacggtttgcataccaagacgcctccgctagtgaggattccgactacgaaaggggttct
tctcagcgccaatcgggtggttcgacccttgaaaacattgatgaatggagatggaagtta
actatgcttcttcgcaacaaagatgagcaagaagtggtgtccagggaaagaaaggacaga
cgtgattttgagcatctttcagaactggcaaataggatgggtttatatagccgtcagtat
tcaaaagttgtagtctttagtaaagtccctcagccaaattacagacctgatctggatgat
aagcgaccacaaagagaggttgtcttaccttttggactgcatagagaagtagatgctcat
ctcaaagcctatgtatctcaaaagccaatgaagacaggaaatttatcagaattttccttt
tcaagatcaagcagtagtggaagtatggttaatgatggaggaccttatgagcaggaggag
ccctcaatacagaatagtgatgccatggagaaaattcttctgcggaaaagcttgcaactg
cgtaataggcaacaacattggcaggaatctcctgaaggtcaaaagatgcttgaacttcgt
agaagcctgcctgcatataaagaaaaagatgcactattaaaagccatatcagaaaatcag
gtcatagttgtctcaggtgaaacaggttgtggtaaaactacacagcttcctcagtacatt
ttagaatctgagattgaagctgctcaaggaactgcctgcagtattatttgtactcagcct
agacgaatatctgccatggctgtttctgaaagagttgctgcagagcgaggggagaaacta
ggggaatctgttggttacaaagttaggctggaaggggtgaaggggagggacacccgcctt
cttttttgcaccactggaatattattgaggcgattacttgtcgacagaaagttgagaggt
gttacacatgttattgttgacgagattcatgaacgtggaatgaacgaagattttcttctt
atcgtcctgaaagaacttctccctcgtcgaccagagttgaggttgattttgatgagtgca
accctaaatgctgagcttttctcttcctactttggtggtgctccaatgattcatattcct
ggttttacatatccagtccgagcacattttctggagaacattctagaaatgactaggtat
cagttgaatgaatacaatcaaattgatgattatggtcaagaaaaggcatggaaaatgcag
aaacaagctccaggttccaaaaagaggaagagccaaattgcttctacagttggggaggta
cttgaagctgctgatttcagggagtacagtccaaggactcgagagtctctctcctgttgg
aatcctgattccattggtttcaacctcattgagcatctgctttgccacatagtcaggaaa
gaacggcctggtgctattttggtttttatgactggttgggatgacattaactccttgaag
gatcaactccaatctcatcccctattaggagatcctagcagggtcctactgcttgcatgt
catggttctatgcctagctctgagcagaggttaatatttgataagccagaagatgaaatt
cggaaaattgttctagcgacaaacatggctgagactagtatcactatcaatgatgttgtt
tttgtggttgattgtggaaaggcgaaggagacatcatatgatgcactaaataacactccc
tgtttgcttccatcctggatttcaaaggctgcttctcggcaaagaagaggcagagctggt
cgtgttcaacctggcgagtgttaccatctctaccccagatgtgtatatgatgcctttgct
gattatcagctacctgaacttttgaggacgccgttgcagtctttatgtttacaaatcaaa
agtctgcaacttggaagtatttcagagttcctatctaaggccttacaggcgccagaaccc
ctatcggttcaaaatgctgttgagtatttgaagattattggggccttagatgataatgaa
gatctgacagtgttaggacgccacctgtcaatgcttcccgttgagcctaaacttggaaaa
atgctcatattaggggctatcttcaactgtctggatccagtaatgactgttgttgcaggc
cttagtatgagagatccattcctgatgccgtttgacaaaaaggatcttgcagaatcagca
aaagcacagttctccgcccgtgataatagtgatcatcttgctcttgtccgagcttatgat
ggttggaaaaatgctgaaagagtgcagtctggttatgagtactgctggaggaattttctt
tctgcacaaactctaaaatccattgactctcttcggaagcagttcttctttttgctcaag
gatactggtctggttgatcatcatacagaaacttgtaatacatggagccatgatgaacac
cttgtccgagcggtcatctgtgccggattatttcctggaatatgctctgttgtgaacaaa
gagaagtcgattgcgctgaaaacaatggaagatggacaagtaatgctatactcgaattct
gtcaatgctggggtacccaaaattccatacccatggctagttttcaatgaaaaggtgaaa
gtgaattcggtatttctccgggattcaactggtgtatctgattctgtactccttttgttt
ggaggcaacatctccaggggcggcctggatgggcacctgaagatgttgggaggatatttg
gagtttttcatgaatcctgcattagcaaatacatatattttcttaaagggggagcttggc
gaactgattcataataagctcctcaaccccaaattggatatgcagtctcatactcacctc
ctatcagcgctaagattactggtctcagaggaccaatgtgagggtagatttgtctttggc
cgcaaggtgccagtaccctcaaagaaggcaacaaaagagattaaacctggcgccttgacg
gttggtgataaaggtgggccaaataataattccaaaaatcagctgcaaactttgcttgtt
agagccggacatgatgcacccacctacaagacaaaacaattgaaaaacaaccagttctgt
tctacagtgatcttcaacgggttgaactttgtagggcagccttgcaatagcaagaaacaa
gcagagaaggatgcagctgctgaggctgtgctttggttaaagggtgagaggcattcatct
tccacagatattgaccatatgtcaatgcttctaaagaagagtaaaaagacaagccagaaa
aggacttcatttgatagtgctaagtggggttaa
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