Prunus dulcis (almond): 117627552
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Entry
117627552 CDS
T07328
Name
(RefSeq) CCR4-NOT transcription complex subunit 3 isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117627552
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117627552
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117627552
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117627552
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
LCE6A
Motif
Other DBs
NCBI-GeneID:
117627552
NCBI-ProteinID:
XP_034215573
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All DBs
Position
5:18000377..18009003
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AA seq
900 aa
AA seq
DB search
MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDTDNANQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQALVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPREKAKSETRDWINNVVGELESQIDSFEAEIEGLSFRKGKGRPPRLTHLETSITRHKA
HIMKLELILRLLDNDELSPEQVNDVKDFLEDYVERNQEDFDEFSEVDELYNTLPLDKVES
LEDLVTIVPPGLVKGAPVLGLKTSLAVSATPMPAAATSTTQQSTSVQEPVEDTVSQDSNV
DNIPRTPPPKSSALASSPASTPVGGHASPLSVSVSSHNLPGPPSVSAVPGSIAVRGVTEN
AGASNSSSPVSLSASVKEEELASFPGRRPSPSLSDGGLVRGVGRGGLSAQSPSSNPLSSS
NVAPSNSTLSAAPSVSDVTKRNILGADERIGSSSVVQPLVSPLSNRLILPQAAKASDGSI
PVDSGNAGEAAAIPGRAFSPSMVSSMQWRPGSSFQNQNEAGLFRGRTEIAPDQREKFLQR
LQQVQQGHSTILGMPPLAGGNHKQFSGQQQNPLLQQFNSQNSSVSSQAGLGVGVQAPGLG
TVAPTTLQQQLNSIHQQSNQQALMSSGPKEADVGHPKVEDQQQQQNTPDDSTVDSTPVSG
LVKNLINEDDLKASYAIDSLAGVSGSSTEPAQVPRDIDLSPGQPLQPNQPSGSLGVIGRR
SVSDLGAIGDNLSGSTPNSGGTHDQLYNLQMLEAAYYKLPQPKDSERARSYTPRHPAITP
PSYPQAQAPIVNNPAFWERLGLEPYGTDTLFFAFYYQQNTYQQYLAAKELKKQSWRYHRK
YNTWFQRHEEPKVATDEYEQGTYVYFDFHIANDDLQHGWCQRIKTEFTFEYNYLEDELIV
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atgggggcgagtcggaaacttcagggcgagatcgaccgcgttctcaagaaggtccaagaa
ggcgtggatgtcttcgatagcatatggaacaaggtttatgatacggacaatgcgaaccag
aaggaaaagtttgaggcggacctaaagaaggagattaagaagctccagaggtacagggac
caaatcaagacttggattcaatccagtgaaatcaaggataagaaggtcagtgcctcttat
gagcaggctctggtggatgctcgcaagcttatcgagcgtgaaatggaaaggtttaagatt
tgtgaaaaggagaccaaaacaaaagcattttctaaagaaggcttgggccaacaacctaaa
accgatccgagggagaaggccaagtctgagacaagggattggataaacaatgtggttggg
gagttggaatctcagattgacagctttgaagctgagattgaaggcctatctttcaggaaa
gggaagggcagaccacccagactgacccatctagagacatctattactcggcataaggct
cacataatgaagttagaactgatcctgaggctattggataatgatgaactgagtcctgag
caggtcaatgatgtcaaagacttcttggaagactatgttgaacgcaatcaggaggatttt
gatgaatttagtgaagttgatgagctttacaacaccttaccattggacaaagtggagtcc
cttgaagatctggttactatcgtccctcctggtcttgtcaagggtgcaccggtgcttggc
ttgaagacttctttggcagtatccgcaactccaatgcctgccgcagctacttccactact
cagcagagtacttctgtacaagagccagttgaagatacagtttcccaggacagtaatgtt
gataatattcctaggactccacctcctaaaagtagtgcacttgcttcttctcctgcatca
acaccagttgggggtcatgcaagtcctctctctgttagtgtttcatctcacaatttgcct
ggtccgccaagtgtttcagccgttccaggttcaattgctgttcgtggtgtcacagagaat
gcaggagcttctaattcttcatctcctgtaagtctgtctgcttctgtgaaggaagaagaa
ttagcaagcttcccgggccgtagaccatcgccatctctttctgatggtgggcttgtgagg
ggcgttggtagaggtggcctctctgcacagagtccatctagtaaccctcttagttctagc
aatgtagctcctagtaatagtacccttagtgcagctccttcggtttctgatgtgacaaag
agaaatatattgggagctgatgagagaattgggagtagtagcgtagtgcagcctcttgtt
tcccctctaagtaacagattgatcttgcctcaagctgccaaggctagtgatggaagtatt
ccagttgattctggtaatgctggtgaggctgctgctattcctggcagagcattttctcct
tctatggtctccagcatgcaatggaggcctggaagttccttccaaaaccagaacgaagcg
gggttgtttcgtggaagaactgaaatagcacctgatcagagggagaaatttttgcagcgg
ctccaacaagtgcagcaaggtcacagtaccattctcggcatgcctcctcttgctggtgga
aatcataagcaattttctggacagcagcaaaatccactcttacaacagtttaattctcag
aactcatctgtatcttctcaagctggcctcggagtaggggtacaagccccaggtcttggt
actgttgcacctaccaccttacagcagcagctaaattctatccatcaacagtctaaccaa
caggcattgatgtcgagtggaccaaaagaagctgatgttggtcatccaaaagttgaggac
cagcagcaacaacaaaatacacctgatgattcaactgtggactctacgccggtttctggg
cttgtaaagaatctaattaatgaggatgatttgaaagcctcatatgcaattgattctctg
gctggagtttctggctcttcgacagagcctgctcaagtaccacgagatatcgatctctct
cctgggcaacctttacagcccaatcaaccttctggtagtcttggtgttattggccgaaga
agtgtttctgaccttggtgcaattggtgataacctttctggatcaactcctaattctggg
ggaacgcacgatcagttgtataatttgcagatgcttgaggctgcttattacaaacttcca
caacccaaagactcggaacgtgcaaggagctacactccaaggcaccctgcaataactcct
cctagctacccccaagcacaagcacctattgttaacaatcctgccttctgggaacgtttg
ggtcttgaaccgtacggcactgataccctgttctttgcattttactatcagcagaacact
tatcagcaatatttggcagccaaagagttgaagaagcaatcttggagataccacaggaaa
tataacacttggtttcaacgacacgaggagccaaaagttgccactgatgaatatgaacag
gggacatatgtgtactttgacttccatatcgcaaatgatgatctacaacatggatggtgt
caaaggatcaaaaccgagtttacttttgaatataactatcttgaagatgaacttatcgtt
tag
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