Prunus dulcis (almond): 117628207
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Entry
117628207 CDS
T07328
Name
(RefSeq) DNA mismatch repair protein MSH4
KO
K08740
DNA mismatch repair protein MSH4
Organism
pdul
Prunus dulcis (almond)
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pdul03036
]
117628207
Chromosome and associated proteins [BR:
pdul03036
]
Eukaryotic type
Meiosis-specific proteins
Others
117628207
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
AAA_29
AAA_23
AAA_27
Motif
Other DBs
NCBI-GeneID:
117628207
NCBI-ProteinID:
XP_034216489
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Position
5:6948050..6957223
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AA seq
792 aa
AA seq
DB search
MEDDAGERSSFVIGLIENRAKEVGVAAFDLRLASLHLSQYIETSSSYQNTKTLLQFYDPM
VIIVSPNKLAPDGMVGVSELADRFYATVKKVVMARGCFDDTKGAVLIKNLAAKEPSALGL
DTSYKQYYLCLAAAAATIKWIEAEKGVIITNHSLLVTFNGSFAHMNIDATSVQNLEIIEP
LHSTLWGTSNKKRSLLNMLKTTKTVGGSRLLRANLLQPLKDIETINARLDCLDELMSNEQ
LFFGLAQVLSKFPKESDRVLCHFCFKPRKITNKVMGVDYARKSQVLVSSIILLKTALDAL
PLLSKVLKDAKCFLLANVYKSVCENEKYAAVRRRIGEVIDEDVLHARVPFVARTQQCFAV
KAGIDGLLDIARRSFCDTSEAIHNLANKYREDFKLPNLKLPFNNRRGFYFSIPYKDIQGK
LPSQFIQVLKHGNNLHCSTLELASLNVRNKSAAAECYIRTEVCLEELVDAIREDVSALTL
LAEVLCLLDMIVNSFAHAISTKPVDRYTRPEFTDNGPMAIDAGRHPILETIHNDFVPNNI
FLSEASNMVLIIGPNMSGKSTYLQQVCLIVILAQIGCYVPARFSTLRVVDRIFTRMGTVD
NLESNSSTFMTEMKETAFIMQNVSQRSLIVMDELGRATSSSDGFAIAWSCCEHLLSLKAY
TIFATHMENLSELVTVYPNVKILHFDVDIKNNRLDFKFQLKDGARHVPHYGLLLAEVAGL
PSSVIETARNITSRITEKEVKRMEVNCLQYQPIQMAYHVAQRLICLKYSSQDEDSIREAL
HNLKDSYIHGRL
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggaagacgacgcaggagagagatcgagcttcgttatcggcctcatcgagaacagagct
aaggaggtgggagttgcagcctttgatttaaggttggcttctctccatctttctcaatat
attgaaactagcagctcatatcagaatacaaaaactttgctgcaattctatgatcctatg
gtgattattgtttcaccgaacaagctggcacctgatggtatggttggagtttcagaattg
gctgacagattttatgctacagtcaagaaggttgtaatggcccgtggttgcttcgatgac
actaagggtgccgtgctgattaaaaatctagcagcaaaggaaccttctgcactaggattg
gatacttcttacaagcagtattacctctgcctggctgcggcagcagctacaattaagtgg
atagaagcagagaaaggggtcatcattacaaaccactcacttttggtcacttttaatgga
tcatttgcccatatgaatattgacgctactagtgttcaaaatttggaaatcattgagcca
cttcattcgacactttggggaacaagcaacaagaaaagaagtttattgaacatgctcaag
acaacaaaaactgttggagggtctagacttcttcgtgccaatctattgcagcctttaaaa
gatattgaaactataaatgcccgtcttgattgcctggatgagctcatgagcaatgaacag
ctgttctttggactggctcaggttttgagtaaatttccaaaagagagtgatagggtactt
tgtcacttctgcttcaagccaaggaaaataacaaacaaagtcatgggtgttgattatgct
agaaaaagccaggtcttggtttcaagcattattctcctcaaaactgctctagatgccttg
cctttactctcgaaggttcttaaagatgcaaagtgttttcttcttgcaaatgtttacaag
tctgtatgtgaaaatgagaagtatgctgccgttagaaggaggattggagaggtgattgat
gaagatgtgcttcatgcacgggttccttttgtagcccgcacacagcagtgttttgctgtc
aaggctggaattgatggacttttggatattgcacggagatcattttgtgatactagtgaa
gctatacataatcttgctaacaagtatcgtgaagatttcaagttgcccaatttgaaactc
ccatttaacaataggagagggttctactttagcattccatataaggacattcaagggaag
cttcctagtcagttcattcaggtattgaaacatggtaacaatttacactgctcaaccttg
gagcttgcttctctaaacgttagaaataagtctgcagctgcagaatgctacatacggaca
gaagtttgcctggaagaattagtagatgccatacgagaggatgtttctgcactcacactg
cttgcagaggtcttatgccttttggatatgatcgttaattcatttgcacatgccatttcc
acaaagccagttgatcgttacaccagaccagaatttacagataatggccccatggcaatt
gatgctggaagacaccctatcctagagaccatacacaatgactttgtccccaacaatata
tttttatcagaggcatcaaacatggtgcttatcataggcccaaacatgagtggaaagagt
acttaccttcaacaagtgtgtcttatagttattcttgctcagatcggttgttatgttcct
gctcgcttctcaactctaagggttgttgatcgtatatttacaaggatgggtacagtagat
aatcttgaatccaactctagtacgttcatgacagaaatgaaagaaacagcttttatcatg
caaaatgtctcccagaggagtctgattgttatggatgaacttgggagggctacatcttct
tctgatggatttgcaattgcttggagctgctgcgaacatttgttatcactgaaagcgtat
actatatttgctactcatatggagaacctatcagaactagtaaccgtctatccaaatgtg
aaaatacttcactttgatgttgacattaaaaataatcgtctagatttcaagtttcaactg
aaggacggagcgaggcatgttccgcactatggccttctattagcagaagtggcaggactg
ccaagctcagtaattgaaacggccagaaacatcacatccaggatcacagaaaaggaagtg
aagaggatggaagtaaactgccttcaataccaaccgatccagatggcgtaccatgttgct
cagcggctgatatgtttgaagtactccagccaggatgaggattcaatcagagaagcactg
cataatttgaaagacagctacattcatggaaggctgtag
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