Prunus dulcis (almond): 117628221
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Entry
117628221 CDS
T07328
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03030
DNA replication
pdul03420
Nucleotide excision repair
pdul03430
Mismatch repair
pdul03440
Homologous recombination
pdul03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117628221
03420 Nucleotide excision repair
117628221
03430 Mismatch repair
117628221
03440 Homologous recombination
117628221
03460 Fanconi anemia pathway
117628221
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
pdul03000
]
117628221
03032 DNA replication proteins [BR:
pdul03032
]
117628221
03400 DNA repair and recombination proteins [BR:
pdul03400
]
117628221
Transcription factors [BR:
pdul03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
117628221
DNA replication proteins [BR:
pdul03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
117628221
DNA repair and recombination proteins [BR:
pdul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
117628221
MMR (mismatch excision repair)
117628221
DSBR (double strand breaks repair)
HR (homologous recombination)
117628221
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
zf-CCHC
RADX
CDC24_OB3
zf-CCHC_3
DUF223
zf-CCHC_5
DUF6558_C
Motif
Other DBs
NCBI-GeneID:
117628221
NCBI-ProteinID:
XP_034216505
LinkDB
All DBs
Position
5:1895800..1899486
Genome browser
AA seq
873 aa
AA seq
DB search
MAVKLTEGAIMKICTGEYHDETWKPILQVLDVRMVNTARSGAQPGPDNERYRVLISDGSH
HQQGMLGTQKNTLVQQGLLQKGSIVCLKQFTCTQVQNRLIIIIIELDLVLDKCDLIGEPV
AGPKYLNAQSSGALPGNAQSIGGSAHSGGAVHQTVTKATPEQPRVNQSFGSAYSGGSDPG
RHATMSTTPNHPKPETGFGFPGSAPLSGSYSNQNTGFRSPRPEVPQPTLNAYARPPQPTY
QQPSPTYPNRGPVAKNEAPPRIMPIAALNPYQGRWTIKARVTAKGELRHYSNPRGDGKVF
SFDVLDSHGGEIRATCFNAVADQFYNQIEVGKIYLISKGSLKAAQKAFNNLNNDHEITLD
HASIIQPCFEDDDSIPKQNFHFCRISDVEGLNNNSIVDVIGVVSSINPPASILRKNGVET
QKRSLQLKDMSGRSVEVTLWGNLCNAEGQRLQSMCDSGAFPVLAVKGAKVNDFNGKAVGT
IPSSQLFIEPNIEEAREMRSWFDKEGRNTSCIPISRETAGVGRTDIRKSISQIKDERLGT
SEKPDWITVSGTVSFIKVDSFCYSACPLMNGDRQCSKKVTNNGDGKWRCDRCDQSMEECD
YRYLLQLQIQDHTGTTWVTAFQEGGEEIMGIPAKDLYFLKYEEQDDEKFVEITRKVLFTK
FNFKLKIKEEIYGDEQRVKSTVLKAEKVNFSSEARFHLELMNKLKMETISSSASEGDNVM
PSAGMNATGFGNTASRQPTLDVNVGYNNNAGREFGGPESQGGTYRNQFSSARSPSTGSVG
SYLSCNSCGDAGHSSMNCPSVMNGPGQSSGAGYNNRVSSRPGVGNTSGDCYKCHQPGHWA
RDCPGLNTTPAYGGSGGNPVRYGGVANQRVGGF
NT seq
2622 nt
NT seq
+upstream
nt +downstream
nt
atggctgtgaagctaacagagggggcgataatgaagatttgcacaggggagtaccatgac
gagacctggaagcccatcttgcaagtgcttgacgtgaggatggtcaatacagcgcgcagt
ggggcccagccgggccccgataacgagagatacagggttttgatctcggatggttcccac
caccagcaggggatgctgggcacccagaagaacacactggttcagcaaggcctgcttcag
aagggctccatcgtttgcttgaagcaattcacctgtacccaagtccaaaaccgcctgatc
atcattataattgaattggatttggtgcttgataaatgtgatctcattggagagcctgta
gcaggacctaaatatctgaatgcacagtcctcaggggcattacctggaaatgcccaatct
attggtggcagtgcacattctggtggcgcagttcatcaaactgtgactaaagctactccg
gaacaacctagagtaaatcaatcatttggtagtgcttattctggtggttctgacccagga
agacatgcgacaatgagtactactcccaatcaccctaaaccagagactggttttgggttt
cctggatcagcaccattaagtgggtcatatagcaatcagaacacaggttttcgcagccct
agacctgaggttccacagccaactctaaatgcttatgctcggccgcctcagccaacttat
caacagccatctccaacgtatcctaatagaggaccagttgccaaaaatgaagcccctcct
agaataatgccaattgctgctctgaatccataccaagggcggtggacaatcaaggctaga
gtgacagctaaaggagaacttaggcactacagcaatcctcgtggtgatgggaaagttttt
tcttttgatgttcttgattctcatggtggagaaattcgagcaacctgttttaacgctgtg
gctgatcaattctacaaccagattgaagttggcaagatttatttgatctccaagggtagt
ttaaaagcagcccaaaaggctttcaacaacctcaacaatgaccatgaaattactttagat
cacgcatcaataatacagccatgttttgaggatgacgactcaattccaaagcagaatttc
catttctgtcgtataagtgatgttgaaggcttgaacaacaactctattgtcgatgtaata
ggtgtggtatcctccatcaatccccctgcttctatactgaggaaaaatggtgttgagact
cagaagagatccctccagttgaaggatatgtctggtcgtagtgtcgaggtaactctatgg
ggaaatttgtgcaatgcagagggacaaagactgcaaagtatgtgtgattctggtgcattc
ccagtgctggctgtaaaaggtgctaaagttaatgatttcaatgggaaggcggtagggacc
attcctagtagtcagctttttatagagccgaatattgaagaggcacgtgagatgaggagt
tggtttgacaaggaaggaagaaatacctcatgtatccctatttccagggaaacagcaggt
gtgggtagaacagatatccgaaagtctatatctcaaattaaagatgagcggctggggact
tccgagaagccagactggatcacagttagtggaactgtttcctttataaaggttgatagt
ttctgctattcggcatgcccgctcatgaatggtgatcgacaatgcagcaaaaaagttaca
aataatggagatggcaaatggaggtgcgatagatgtgatcagtccatggaagaatgtgac
tacagatatttactccagttacagatacaggatcatactggcacaacatgggtaacggca
tttcaggagggtggtgaagaaatcatgggtatacctgcaaaagatttgtattttttgaaa
tatgaagagcaagatgatgagaagtttgtagaaatcactcgaaaggttctctttactaaa
ttcaatttcaagttgaaaataaaggaggagatttatggtgatgaacaacgtgtaaaatca
actgttttgaaagcagagaaggtgaacttttcatcggaggctagatttcatttggaattg
atgaataaacttaagatggagactattagttcttctgcctctgagggggataatgtaatg
cccagcgctgggatgaatgctactggatttgggaacactgcaagtagacaacctacacta
gatgtgaatgttggttacaacaacaatgctggtagagaatttggaggaccagaaagtcaa
gggggtacctatcgaaaccagtttagtagtgctaggtctccttcaactggctctgtcggt
tcatatctgagctgtaacagttgtggggatgctggccatagctccatgaactgcccaagt
gtaatgaatggcccagggcagtcatcaggagcgggctataacaacagagtatcttctagg
ccaggtgttggcaatacttctggtgactgctacaaatgccaccaacctggacactgggca
agagactgtcctggcttgaacactactccagcgtatggaggcagcggagggaaccctgtg
agatacggaggtgttgcaaaccaaagggtcggtggcttttga
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