Prunus dulcis (almond): 117628589
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Entry
117628589 CDS
T07328
Name
(RefSeq) DNA mismatch repair protein MSH2 isoform X1
KO
K08735
DNA mismatch repair protein MSH2
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
117628589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdul03400
]
117628589
DNA repair and recombination proteins [BR:
pdul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
117628589
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_I
MutS_II
Motif
Other DBs
NCBI-GeneID:
117628589
NCBI-ProteinID:
XP_034216964
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Position
5:16804603..16811032
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AA seq
942 aa
AA seq
DB search
MDANFEDQSKLPELKLDAKQSQGFLSFFKTLPHDPRPIRLFDRRDYYTAHGENATFIAKT
YYRTTTALRQLGSGLDGLSSVSVSKNMFETIARDLLLERTDHTLEIYEGSGSSWRLVKSG
TPGNLGSFEDVLFANNDMQDTPVVVALLPNLRENGCTVGLGYVDLTKRVLGLAEFLDDSH
FTNVESALVALGCKECLLPLESGKTSEIRTLHDALNRCGVMLTERKKTEFKMRDLVQDLS
RLVKGSIEPVRDLVSGFEFAAGALGALLSYAELLGDESNYGNYSIQRYNLDSYMRLDSAA
MRALNVLESKTDANKNFSLFGLMNRTCTAGMGKRLLHRWLKQPLLDVDEINSRLDLVQAF
VEDPALRQDLRQHLKRISDIERLMHNLEKKRAGLQHIVKLYQSSIRLPYIKSALERYDGE
FSSLIKERYWDPLELWTDDGHLNKFVALVESAVDLDQLENGEYMISSTYDPALSALKDEQ
ESLEHRIHNLHKETAKDLDLPLDKALKLDKGTQFGHVFRITKKEEPKIRKKLTTQFIVLE
TRKDGVKFTNTKLKKLGDQYQRIVEEYKNCQKELVNRVVQTTATFSEVFWSVAGLLSELD
VLLSFADLASSCPTAYTRPIITPSDEGDIILEGSRHPCVEAQDWVNFIPNDCKLVRGKSW
FQIITGPNMGGKSTFIRQVGVNILMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGVS
TFMQEMLETASILKGATDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVIKAPTLFATH
FHELTALAHENSVHEANMKQIVGVANYHVSAHIDSSSHKLTMLYKVEPGACDQSFGIQVA
EFANFPESVVSLAREKAAELEDFSATAVIPNDAIEQVGSKRKREYDSDDMSRGSARAHEF
LKEFSNLPLETMDLKEALQKVSKMKNDLQKDAVNSHWLQQFF
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggatgccaattttgaggatcagagcaagcttcccgagctcaaattagatgccaagcaa
tctcaagggtttctctcatttttcaaaaccctcccccatgacccaagacctatccgattg
tttgatcgtcgggactactatactgcccatggtgaaaatgctactttcattgcaaagacc
tactatcgtaccactactgctttgcggcagttgggtagcggattggatggcttatccagt
gtcagcgttagtaaaaacatgtttgagacaattgcccgtgatctactactggaaagaaca
gaccacactcttgagatttatgagggtagtggctcaagttggaggctggtgaaaagtgga
acccctggaaatctcggcagttttgaagatgttttgtttgccaacaatgatatgcaggat
accccagtggttgttgcactattacctaacttacgtgaaaatggttgcacagttgggtta
ggatatgttgatctaactaaacgagtacttggattagctgaatttcttgatgatagccac
tttacaaatgtggaatcagctctagtcgcacttggttgcaaggaatgccttctgccccta
gagagtggcaaaacaagtgaaattagaacattgcatgatgcattgaatagatgtggtgtg
atgttaactgagaggaagaagactgaatttaagatgagagatttggttcaggatctcagt
cggcttgtcaaaggctctattgaaccagttcgagatttagtttcagggtttgagtttgca
gctggagctttgggggcattgctctcttatgcagagttacttggtgatgagagcaattat
ggaaattatagcattcaaagatataatctagacagctatatgaggttagattctgcggca
atgagggcacttaatgtcctggaaagcaaaactgatgcaaacaaaaatttcagtttgttt
ggtcttatgaatagaacttgtactgctggaatgggtaaacgattactgcacaggtggtta
aaacagcctttattagatgtagatgaaatcaattcgaggctagatttggtacaagcattt
gtggaggatcctgcacttcgccaagatttgaggcagcatctgaaaagaatctcagacatc
gagcgactgatgcacaatcttgagaagaaaagagctggtttgcagcatattgtaaaactt
tatcagtcaagtataagactgccatacattaaaagtgccctagaacgctatgatggagaa
ttttcctcgctgatcaaggaaaggtattgggatccccttgagttatggactgatgatggt
cacttaaataagttcgttgctctagtggaatctgctgttgaccttgatcaacttgagaat
ggagagtacatgatatcatctacttatgaccctgcactttctgcactaaaagatgagcaa
gagtcgctggagcaccgaatacacaatttgcataaagaaactgctaaagatcttgatctc
cctctagacaaggctttgaaattagataaaggcacacaatttggacatgtcttcagaatc
acaaagaaggaagagccaaaaataaggaaaaagctcacaacgcaattcattgttctggaa
acccgaaaggatggagtgaaatttaccaacacaaagcttaaaaagttaggggatcagtat
caaagaatagttgaagagtataagaattgtcagaaagagctggttaaccgagttgttcaa
actacagcaactttctccgaggtgttctggtctgtagctgggttgctttctgaattggat
gtcttacttagttttgctgatttggcttctagctgtcctactgcttacacaaggccaatc
atcactccatcggatgagggggatattatattagaagggagtagacatccttgtgtggag
gctcaagactgggtaaattttatacccaatgattgtaaacttgtgagaggaaagagttgg
ttccaaatcattacagggcccaatatgggtggaaaatctacatttatccgacaggtcggt
gtgaatattctaatggcacaagttggttcttttgttccttgtgacaaagctagcatttct
attcgtgattgcatttttgctcgcgtgggtgctggtgactgccaactacgcggagtttct
accttcatgcaagaaatgcttgagaccgcatctatactgaaaggagctacagataagtca
ctgataatcatcgatgagttaggccgagggacatcgacttatgatggattcggtttagct
tgggccatttgtgagcaccttgttgaagtgattaaagcacctaccttgttcgcaacccat
tttcatgaattgactgcattagctcatgaaaatagtgttcatgaggccaatatgaagcaa
attgttggtgtagcaaactatcatgttagtgcacatattgactcatcaagccacaagttg
actatgctgtacaaggttgagccaggggcttgtgatcaaagttttggtattcaggttgca
gaattcgcaaactttcctgaaagtgttgtttcccttgctagagagaaggctgctgaattg
gaggatttttcagctactgcagttattccaaatgatgctatagaacaggttggatccaag
cgcaagagagagtatgactctgatgatatgtctagaggatccgctcgggcacacgaattt
ctgaaggagttttctaatttgccattggaaacaatggatttaaaggaggctttgcaaaag
gttagcaagatgaagaatgacttgcaaaaggatgcagtaaattcccactggctccagcaa
tttttctag
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