Prunus dulcis (almond): 117628615
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Entry
117628615 CDS
T07328
Name
(RefSeq) Fanconi anemia group J protein homolog
KO
K15362
fanconi anemia group J protein [EC:
5.6.2.3
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03440
Homologous recombination
pdul03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117628615
03460 Fanconi anemia pathway
117628615
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdul03400
]
117628615
Enzymes [BR:
pdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117628615
DNA repair and recombination proteins [BR:
pdul03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
117628615
FA (Fanconi anemia) pathway
Downstream FA components
117628615
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
Pex19
Yippee-Mis18
Motif
Other DBs
NCBI-GeneID:
117628615
NCBI-ProteinID:
XP_034216993
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All DBs
Position
5:770441..781332
Genome browser
AA seq
1275 aa
AA seq
DB search
MVSATPAKNPNRTPKGSKNGYQIGGLQVEFPYHPYGAQLAFMSRVISTLDRAHRDGHCHA
LLESPTGTGKSLSLLCSTLAWQQNYKSKHKYANLSHSKPDPKAMTDPTAHGGGFVPEEEP
ASVQLSEKPKPSQFVANNKDQKKQTTPTIYYASRTHSQISQVIREYRKTSYRVPMAVLAS
RRHYCTNAQVHGKENIDEECKHLLKNREVGCLEFKNVQKVKGHASLKKGGCHEAHDIEDL
VKVGKVVKGCPYYAARSLSDDAELVFCPYNYIINPVIRGAMEVDIKGSIVVLDEAHNIED
VARDAGSVDIEEDILHKLQMELEQLCPVDVLVYQPLYEMIQGLISWIERKKNKLEKREFQ
HFVSCWTGDKALRELQEANVSQQYFPILLECATKAFKAATDTESDTPHLSGMAVVTLEGL
VSSLTYFFSRKGCHMADYQLALQRYVKREAGSSGDWTHTLSLWCLNPAVVFKDIADLSLS
VILTSGTLSPMNSFSSELGLQFGTTLEAPHVIDVESQVWPAVISTGPGTLSLNASYKTAD
EYAFQDALGKSLEEIFKIVPGGCLVFFPSYKLMGKLCKRWRGTGQWSQLNEKKNLFVEPR
GGDQEEFDSVLRSYYDSIRQGNKPVFRRKKSANKTSIKNHFAGVQCAGKNNTDGAAFLAV
CRGKVSEGIDFTDDNARAVIIVGIPFPNINDIQVALKKKYNDTYKSSKSLLSGNEWYCHQ
AFRAVNQAAGRCIRHRFDYGAVILLDERYREERNTAYVSKWLKKSIRRYENFDKSMEELK
SFFSDVKERVSNNMVNISQNFENKDENIHSMGQSEGFTKMKEKKLKKFDTCEQPENSEMK
HDALLKSQDALEVQKFVRINEDADLSKEIIDLECHLQKDSRYPKPSLFTAFSDADPDISI
VQETPNMDGIISTYSPGYLNKDENSGSTSSTIEASSDFTDHLSYQSASLTNSSKASPKAE
CGFAATPEKNVNLSIQSSMLEIDSSLSLSVNSHTQKRRKSMYSPLANFVYGQCDASDSRS
PDSTSSVRSMATIDTNRQIEFSVETNCSGHKSNVPHVLTTSNLVASSMSVGCVMDKRLQI
SCLLCKTPLGLPENNLYLSCSITSSSKFHLESLHKEVLKSLTGNTSIGMPVIITDISSVD
QRLCNRTSEGAPRQGIWCEEDGCVFSTIFCPFCISHSNCLGVQVMAANASNVHLLNKMLF
YLDQLHIQNLEASSDKASEEKDILPVVDPSLDKASILNSFDKFSYSPIEQNTGGWRTTKS
KLKLPKRRLLPEAEG
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atggtgtctgcgactccggcaaaaaaccctaaccgtacccctaaaggctccaaaaatggg
taccaaatcggaggtctccaggtggagttcccgtaccatccgtacggggcccagctggca
ttcatgagcagggtcatctccactctagatcgagctcacagagatggccattgccacgca
ttgctggagtctccgacagggacaggcaaatcgctttctcttctgtgctctactctcgct
tggcaacagaactataagtctaagcataagtacgcaaatctctcgcattccaaacccgac
ccgaaggccatgaccgatccgacggctcacggcggtggctttgttcccgaagaggaacct
gcaagtgttcaactatcggaaaagcccaagccatcccaatttgtggcaaataataaggat
caaaagaagcagacaacgcctaccatatactatgcatcgaggacgcattcacaaatttct
caagtcatacgtgaatatcggaaaacttcctaccgggtgcctatggcagtgttggcttca
aggaggcattactgcacaaatgcacaagtgcatgggaaagagaatattgacgaagagtgt
aagcatcttttgaagaatcgagaggttggatgcctggaatttaaaaatgtacaaaaagtc
aaaggccatgcatcccttaagaaaggaggctgccatgaggcccacgatattgaagatctt
gtaaaagttggaaaagttgtgaaaggctgtccatattatgcagctcgttctttgtcagac
gatgcagaattggttttttgcccatataactacatcattaatccagtcattcggggagca
atggaagtagatattaagggatccattgttgttcttgacgaagcccacaatatagaggat
gttgctcgtgatgctgggagtgtcgatattgaagaagacattttgcacaaattgcagatg
gaactggagcagctttgcccagtggatgttttggtataccaacctttatacgaaatgata
cagggcctcataagttggattgagcgaaagaaaaataagttggaaaaacgtgaatttcag
cactttgtctcttgttggactggtgataaggctttgagagagctccaagaagctaatgta
tcacagcagtacttcccaatcttacttgaatgtgccacaaaggcattcaaagctgcaaca
gatacagagtcagatacaccacatttaagtggcatggctgttgtgacattggaaggattg
gtctcttcactcacttactttttttcaagaaaagggtgtcatatggctgattatcagctt
gctttacaacgatatgttaaaagagaggctggatcttctggggactggacacatacctta
agtttgtggtgcttgaaccctgctgttgtgtttaaagatattgctgatctttcgttgtct
gtcattttaacatcagggactctgtcaccaatgaattccttttcatctgagcttggactt
cagtttggaacaacgctggaagctccacatgtaattgatgttgaatcacaggtttggcct
gctgttatttctactggcccgggtaccttatcattgaatgcaagttataagacagcagat
gaatatgccttccaggatgcacttggaaaatccttggaggaaatttttaagattgttcca
ggcggctgtcttgtgttcttcccaagttataagctgatgggaaaactatgcaagcgttgg
cgtggaacaggacaatggtctcagttaaatgaaaaaaagaacctttttgttgagccaaga
ggaggagaccaggaggaattcgattctgttttgaggagttattacgattcaattcgtcag
ggtaataaaccagtttttcggagaaagaaaagtgccaacaagacatcaatcaaaaatcac
tttgctggagtccagtgtgcaggcaaaaataacactgatggagctgcttttcttgctgtg
tgccgaggaaaggtttcagaaggaattgacttcacagatgacaatgctcgagcggtgata
attgtcggcattccatttcccaacataaatgatattcaagttgccttaaagaagaaatat
aatgatacatataaatcatccaaaagccttctgagtgggaatgagtggtactgccaccaa
gccttccgagctgtaaatcaagctgcaggacgttgtattcgccataggtttgactacgga
gctgtcatcttattagatgaacgctatcgggaagaaagaaatacagcatatgtgtcaaag
tggctaaagaaatccatcagacggtatgagaactttgacaagtcaatggaggaattaaaa
tcctttttcagtgatgtcaaggaaagggtaagcaataacatggttaacatatcacagaat
tttgagaataaagatgaaaatattcattctatgggtcaaagtgaaggatttacaaaaatg
aaagaaaagaaattgaagaaatttgatacctgcgaacagccagagaattctgagatgaag
catgatgccctgctgaaatctcaagatgctttggaagttcagaaatttgtgcgaataaat
gaggatgcggaccttagcaaggaaattattgatctagaatgtcatcttcagaaagattca
aggtacccaaagccatctttgtttacggcattctctgatgcagatcctgacatttccatt
gtccaggaaacccctaatatggatggtatcatttccacatacagtccagggtacttgaat
aaagatgagaattctggttcaacttcaagcacaattgaggcctcttctgactttacagat
catttgtcatatcagtcagcatccttaaccaatagtagcaaagcttctccaaaagctgag
tgtggctttgcagctactcctgaaaagaatgtgaatttgagcatacagagctcgatgcta
gaaatagactcatctttgagtttgagtgtaaattctcatacccaaaaaaggagaaagtcc
atgtattcaccactggctaactttgtttatggacagtgtgatgcatctgattccagaagt
cctgattctactagttccgtaagatcaatggcaactatagacacaaatcgccaaattgaa
ttcagtgttgagactaattgttcaggacacaaatccaatgttcctcatgtgctcacaact
agtaatttggttgcttcatccatgtccgttggttgtgtaatggacaaaagactacaaatt
tcttgcttactctgcaaaactccattgggccttcctgagaataatctatatctatcatgc
tcaataacttcgtcatcgaaatttcacttagaatctcttcataaagaagtattgaagtct
ctcactgggaacacatccataggcatgcctgttatcataactgacatttcatcagttgat
cagcgactctgcaacagaacttctgaaggtgctcctcggcagggtatatggtgtgaagag
gatggttgtgttttcagtaccatcttctgccccttctgcattagccacagtaattgcctt
ggagtacaggtcatggcggctaacgcatcaaatgttcatttactaaacaagatgctgttt
tacttagatcagttgcatattcaaaatcttgaagcatctagtgacaaggcttcagaagag
aaagatatcttgcctgttgttgatccaagcttggataaagcttctattctaaattccttt
gataaattctcgtactccccgatcgagcagaacacaggaggctggaggactacaaaatca
aagcttaaactacccaaaagacgcttacttcctgaagcagagggttaa
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