Prunus dulcis (almond): 117628858
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Entry
117628858 CDS
T07328
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117628858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117628858
03041 Spliceosome [BR:
pdul03041
]
117628858
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
117628858
Spliceosome [BR:
pdul03041
]
Complex B
Other components
Prp19-related factors
117628858
Complex C
117628858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
TPR_19
Motif
Other DBs
NCBI-GeneID:
117628858
NCBI-ProteinID:
XP_034217290
LinkDB
All DBs
Position
5:complement(1161586..1165625)
Genome browser
AA seq
921 aa
AA seq
DB search
MSISQELYPSLDDLLYEEELLRKPFSLKVWWRYLIARSESPFKKRFIIYERALKALPGSY
KLWSAYLHERFELVRNLPITHFQYETLNNTFERALVTMHKMPKIWILYLQSLTEQKLFTR
TRRTFDRALCALPVTQHDGIWDPYLEFVSRKGIPIETSLRLYRRYLKYDPTHIEKFIEFL
INSSLWQEAAERLASVLNDDQFYSIKGKTKHRLWLELCDLLAKHAKEVSGLNVDAIIRGG
IRKFTDEVGQLWTSLADYYIRRNLHEKARDIFEEGMTTVVTVRDFSVIFDSYVGFEDSML
IHKMETADLSDEEEEEENGVEEDGNEEEVDLRLDVNLSVAELEKEMLNGFWLHDDKDVDL
RLARLEHLMDRSPILANSGFLRQNPHNVEQWHQRVKLFEGNPTKQILTYTEAVRTVDPMK
AVGKPHTLWVAFAKLYENHKDIANARVIFDKAVQVNYKTVDNLAILWCEWAEMELRHKNF
KGALELMRLATAEPSVEVKRRVAADGNQPVQMKLQNSLRMWTFYVDLEESLGKLESTWAV
YERIMDLKIATPQIIINYALLLEKHKYFEDAFKVYEKGTKIFKYPHVKDIWVTYLSKFVK
RYGKKELERARQLFEDAVQAAPADAKKPLYLQFANLEEDYGLAKHAMKIYDEATKAVPNH
EKLSMYEMYIARAAGIFGIPKTREIYEQAIKSGLPDKDVKTMCLKYAELEKSLGEIDRAR
GVYIFASQFSDPRSDVDFWNKWHEFEVQHGNEDTFREMLQIKRSVSASYSQTHFILPKYM
MQKDQRLNIDEAKHKLKQAGVPEDEMAALERQLAPVAKDTTTKDSNRKVGFVSAGVESQM
DKEIKVTAIHEEIKLLEESDSEDDEMVEIALKEVPSAVFGELANKRKEAEKDEGGDVAAA
TKDGDTHLGALERIKRLKRGG
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatctctcaagagctttacccatccctagacgaccttctttacgaagaagagctt
ctccgaaaaccctttagcctgaaggtatggtggcgttacctaatcgctcgatccgaatct
ccattcaagaagcgttttataatctacgagcgagcactcaaggcccttcctgggagctac
aagctttggtccgcttaccttcacgaacgcttcgagctcgttcgcaatttacccatcact
cacttccagtatgaaacccttaacaacacttttgaaagagccctggttactatgcacaaa
atgcccaaaatttggattctgtacttgcaaagtttgacggagcagaagttgttcactcgg
actcgccggaccttcgacagagcgctgtgtgctcttccagtgacgcagcacgacggcatt
tgggacccgtacctggagttcgtgagccgaaagggtattccaattgagacctcgcttcgg
ctttatcgcaggtatttgaaatatgaccctacccatattgaaaaattcattgagttcttg
ataaattctagtctttggcaagaggccgccgagaggctggcttcagtgttgaatgatgac
cagttctattcgataaaggggaaaacgaaacataggctgtggttggaattgtgtgatttg
cttgctaagcacgctaaggaggtgtcaggcctcaatgtagatgctattattagaggtggg
attaggaaatttacagacgaggtgggacagttgtggacctcacttgctgactattacatt
aggaggaatttgcacgagaaagctagggatatatttgaggagggtatgactactgtggta
acggtaagagattttagcgtaatttttgattcgtatgttgggtttgaagatagcatgctt
atccataagatggagactgcggatttgagtgatgaagaggaggaagaagaaaatggggta
gaagaggatggaaatgaggaggaagttgatcttcgattggatgttaacttgtctgtggct
gagcttgagaaggaaatgcttaatgggttttggttacatgatgataaggatgtagatttg
aggttggctcgattggagcatcttatggatagaagtcctatactggctaatagtggcttt
ttacgacaaaatccccataatgtagagcagtggcaccaaagagtgaagctctttgagggc
aatcccacaaagcagatacttacttacacagaggctgtgaggacagttgatccaatgaaa
gcagtgggaaagcctcatacgttgtgggttgcgtttgccaagttgtacgagaatcacaaa
gatattgcaaatgcaagagtgatttttgataaagcagttcaggtgaactacaagacagtg
gataatttggctattctttggtgtgagtgggcagaaatggaattgaggcataagaatttt
aaaggagcactggaactaatgaggctggccaccgcagagccatctgttgaggtgaaacgc
agagtggcggctgacgggaaccaaccggttcagatgaagctgcaaaattccttgagaatg
tggactttttacgtggatttagaggagagccttggtaaattggagtccacctgggctgtt
tatgagaggataatggatttgaagatagccacaccacaaatcataatcaattatgcattg
cttctggagaagcataaatactttgaagatgcgttcaaggtgtatgaaaaaggtaccaaa
atatttaagtacccacatgtcaaagacatatgggttacatatctctctaaatttgtaaag
agatatgggaagaaagaactggaacgtgcaagacagctatttgaggatgctgttcaagca
gcgcctgctgatgcaaagaaacctttgtatcttcaatttgcaaatctggaggaggattat
ggtctagcaaagcacgctatgaagatatatgatgaagcaactaaggctgttccaaaccat
gagaaattgagcatgtatgaaatgtacattgcccgtgctgcagggatatttggcatcccc
aaaacaagggaaatatatgagcaagcaataaaatccggtcttccagacaaagatgtgaag
acaatgtgtttgaagtatgctgagcttgagaagagcttgggagaaattgatcgtgctcgg
ggagtatatatatttgcatcacagttttcggatccacgatctgatgtagatttctggaac
aaatggcatgagtttgaggtgcaacatggaaatgaagataccttccgagagatgcttcaa
attaagcgaagtgtttctgcaagctatagccagacacactttattctacccaagtatatg
atgcaaaaggatcagaggttgaacattgacgaggcaaaacacaagttgaaacaggctgga
gtccctgaagatgaaatggctgctttagagaggcagttggcacctgtggctaaagacact
accaccaaagatagtaacagaaaagtgggctttgtgagtgctggagtagaatcacagatg
gacaaagagatcaaagttactgcaattcatgaagaaattaagctactggaagaaagtgat
tcagaagatgatgaaatggttgaaattgcactaaaggaggtcccatctgctgtttttgga
gagttggctaacaagagaaaggaggctgaaaaagatgagggtggagatgttgctgctgcg
accaaggatggtgacacccaccttggcgcccttgagagaataaagaggctaaaacgaggc
ggttga
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