Prunus dulcis (almond): 117628859
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Entry
117628859 CDS
T07328
Name
(RefSeq) autophagy-related protein 16 isoform X1
KO
K17890
autophagy-related protein 16-1
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
117628859
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
pdul04131
]
117628859
03029 Mitochondrial biogenesis [BR:
pdul03029
]
117628859
Membrane trafficking [BR:
pdul04131
]
Autophagy
Autophagosome formation proteins
Atg12 conjugation proteins
117628859
Others
Specific organelles associated proteins
Auto phagosome
117628859
Mitochondrial biogenesis [BR:
pdul03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
117628859
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_WDR5
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_IFT122_1st
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
EIF3I
Beta-prop_WDR3_2nd
WDR55
Beta-prop_WDR36-Utp21_2nd
WD40_Gbeta
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
DSE1_N
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_VPS8
ATG16
ANAPC4_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR41
Beta-prop_RIG_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
ASA1
CFAP251_N
Beta-prop_ACSF4
Beta-prop_IFT140_1st
NBCH_WD40
Beta-prop_Aladin
Beta-prop_NOL10_N
Beta-prop_HPS5
Beta-prop_WDR35_TULP_N
Beta-prop_DCAF4
Beta-prop_SCAP
Beta-prop_NWD2_C
Beta-prop_SPT8
Beta-prop_EIPR1
Beta-prop_NUP159_NUP214
WDR54
Beta-prop_WDR19_1st
eIF2A
WD40_RFWD3
Beta-prop_Vps41
Beta-prop_Nup120_160
PEP5_VPS11_N
Cytochrom_D1
KNTC1_N
DUF7165
PQQ_2
Small_EgtBD
Beta-prop_RIG_1st
Motif
Other DBs
NCBI-GeneID:
117628859
NCBI-ProteinID:
XP_034217292
LinkDB
All DBs
Position
5:13552859..13555930
Genome browser
AA seq
523 aa
AA seq
DB search
MTIHCREVYYAQSTLFVQVTGGDSKGSDKARTEGSSEAAFARRRCSCSGFYRSCEANCSS
EWKEKAESLELELQQCYKAQSRLSEQLVVEVAESRASKASLQEKEAAVADLQKELTEKRD
ECSQLTVDLEEKIKALELVVSENKEIRAQLEEMSIRAKNAEAESKVLIDRWMLEKMKDAE
RLNEANALYEDMIERLRASGLEKLARQQVDGVVRQSEEGAEYFVESTIPSACKSRIHAHE
GGCASILFEYNSGKLITGGQDGSIKMWDTNTGQLNHTLHGCIGSVLDITITHDNRSIIAA
SSSNKLYAWDVRSGRVRHTLTGHMDKVCAVDVSNSSRHVVSAAYDRTIKVWDLQKGYCTN
TIIFPKNCNALCFSMDGQTICSGHVDGNLRLWDIEKGKLLSEVAAHSNAVTSISLSRNGN
VVLTSGRDNVHNLFDMRSLEVCGTLRATGNRVASNWSRSCISPDDNYVAAGSADGSVYIW
SISKADIVSTLKEHTASVLCCSWSGHGKPLASADKNGIVCTWA
NT seq
1572 nt
NT seq
+upstream
nt +downstream
nt
atgactatacactgtagagaagtttattatgctcagtcaactttgtttgtgcaggtcaca
ggaggagatagcaagggaagcgataaagcacgcactgaaggctcttcggaagcggcattt
gctcgaagaaggtgctcatgctccggcttttatcgctcttgcgaggccaattgctcatca
gaatggaaggagaaagcagagagtttggaactcgaacttcagcaatgttacaaagctcaa
tctcgattgtccgagcaacttgtggtggaagtagcagagtccagagcttcaaaagcttca
cttcaagagaaagaagcagcagtggctgatctccaaaaggagttaacagaaaaaagggat
gaatgctctcaattaacggttgacttagaagagaagattaaagccttagaattggttgtg
agtgagaacaaggaaataagagcgcagcttgaagaaatgtctattagagctaagaatgct
gaggctgaaagtaaggtgttaattgaccgctggatgttggaaaagatgaaggatgctgaa
cgccttaacgaggcaaatgcactctatgaagatatgattgagcggctcagggccagtggt
ctggaaaaacttgctaggcagcaagtagatggtgtggtccgccaaagtgaagaaggtgct
gagtactttgtggagtcaacaattccctctgcatgcaagagcaggatccatgcccatgaa
ggtggctgtgcttccatattatttgagtacaattctggcaaattgattactggcggacag
gacgggtccatcaaaatgtgggatacaaacactgggcaactaaatcatacacttcatggt
tgcattggttccgttcttgatattaccattacccatgataatagatctatcattgcagca
agcagctcaaacaaattgtatgcctgggatgttaggtcggggagggttcgccatactctc
actggccacatggataaagtatgtgctgtagatgttagcaattcaagtcgtcatgttgtg
agtgcagcctatgatcgtaccataaaagtatgggatttgcagaaaggttactgcaccaac
acaattattttccccaaaaactgcaatgctctttgcttcagcatggatggacagaccata
tgttctgggcacgttgatggaaaccttcgcttgtgggatattgagaagggaaagctactc
agtgaagtagctgcacattcaaatgctgttacatccatatctttgtcccgaaatggcaac
gttgtattgacaagtgggagagacaacgtgcataatttgttcgatatgcggtctctggaa
gtctgcggcacattaagagccacaggaaacagagtggcgtctaactggagccggtcctgt
atcagtccagacgacaattatgttgccgctggatctgccgatggttctgtgtatatttgg
tcaatctctaaggccgacattgtgagcactctgaaggaacacactgcatctgtgctgtgt
tgttcatggagtgggcatggaaaacctctagcttctgcggacaagaacggcattgtttgc
acttgggcgtga
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integrated database retrieval system
