Prunus dulcis (almond): 117628866
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Entry
117628866 CDS
T07328
Name
(RefSeq) cleavage stimulation factor subunit 50 isoform X1
KO
K14406
cleavage stimulation factor subunit 1
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117628866
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117628866
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
117628866
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
Beta-prop_WDR75_1st
Beta-prop_DCAF4
WD40_MABP1-WDR62_1st
Beta-prop_NWD2_C
Beta-prop_SCAP
Cytochrom_D1
Ge1_WD40
Beta-prop_NOL10_N
KNTC1_N
TPM_phosphatase
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
117628866
NCBI-ProteinID:
XP_034217303
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Position
5:complement(16331695..16336954)
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AA seq
437 aa
AA seq
DB search
MENSSLEQVLQDAKLHRQINSLIVAHLRDNNLYQAASVVASATMTSLNDEAPPNKLLELV
AKGLAVEKDEMLRGVPSSAFDLGTSIPSGYGSIPAPRTAAVDFGAVQETKGLSKSFPKHE
TRHLSEHKNIARCARFSPDGKFVATGSSDTSIKLFEVAKIKQMMLPDARDGPVRPVIRTF
YDHLQPINDLDFHPQNTVLISGSKDNTIKFFDFSKMTAKRAFRVIQDTHNVRSVSFHPSG
DFLLAGTDHPIPHLYDINTFQCYLSANSPEIDVNGAINQVRYSATGGMYVTASKDGTIRL
WDGVTANCVRSIAGAHGTAEATSANFTKDQRFVLSSGKDSTVKLWEVGTGKLVKQYLGAT
HTQLRCQAVFNDTEEFVLSIDEPTNEIVIWDALTAEKVAKWPSNHIGAFRWLEHSPTEAA
YVTCGTDRSIRFWKESL
NT seq
1314 nt
NT seq
+upstream
nt +downstream
nt
atggagaacagcagcttggagcaggttctgcaagatgccaagctccacagacaaatcaat
tcgctcatcgtcgctcatcttcgcgacaacaatctctatcaggctgctagtgtcgttgct
tccgcaacaatgacatcattgaatgatgaagccccgcctaataagctccttgaactggtt
gccaagggccttgcagtggagaaagatgagatgttgagaggggttccgtcatctgcattt
gatttgggtacatcaataccttctggatatggttcaatcccagctcctcgcactgctgct
gttgattttggtgcagtgcaggaaacaaaaggcttatcaaagagcttcccaaagcatgag
acacgccatctttcagagcacaagaatattgccagatgtgcaaggtttagtcctgatggg
aagtttgttgctactggaagttctgacacatcaataaagctttttgaggttgcaaaaatt
aagcaaatgatgcttccagatgcaagagatggtcctgttagacctgtcattcgcacattc
tatgaccacttacaacctataaatgacttggatttccatcctcagaacactgttcttata
tcggggtcaaaagataacaccataaagttctttgatttttccaagatgactgcaaagaga
gcattcagagtcatccaggatacacacaatgtgcggtcagtatcttttcatccttctgga
gattttcttctagctgggactgatcatccaattccacacttgtatgatatcaataccttc
cagtgctacctgtctgcaaattccccagaaatcgatgttaacggagcaataaatcaggtc
aggtattcagctacaggtggcatgtatgttacagcttctaaagatggtaccattcgttta
tgggatggtgtaactgccaattgcgtacgctcaatagctggtgcacatggcacggcggag
gcaaccagtgcaaactttactaaggatcaaaggtttgttctctcttctggaaaggattct
actgtgaaactttgggaagtcggcactggaaaattggttaaacaatatctaggagctaca
catactcaattgcggtgtcaggctgtttttaacgataccgaagaatttgtactctccatc
gatgaaccgaccaatgagattgttatatgggatgctctgacagcagagaaagtagcaaaa
tggccttccaatcatattggtgctttccgttggcttgagcactcaccaacagaggcagca
tatgttacctgtgggactgacagatcaatccggttctggaaggaaagtctgtaa
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