Prunus dulcis (almond): 117629124
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Entry
117629124 CDS
T07328
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03013
Nucleocytoplasmic transport
pdul03015
mRNA surveillance pathway
pdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117629124
09122 Translation
03013 Nucleocytoplasmic transport
117629124
03015 mRNA surveillance pathway
117629124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117629124
03041 Spliceosome [BR:
pdul03041
]
117629124
Enzymes [BR:
pdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117629124
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117629124
Spliceosome [BR:
pdul03041
]
Complex C
Other components
EJC/TREX
117629124
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117629124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
117629124
NCBI-ProteinID:
XP_034217524
LinkDB
All DBs
Position
1:complement(36544560..36550108)
Genome browser
AA seq
426 aa
AA seq
DB search
MGETRDDVYEEELVDYEEEEEKAPDSAAKVNGEAPKKGYVGIHSSGFRDFLLKPELLRAI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLC
HTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKLHKDLLKNECPHIVVGTPGRILALA
RDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEAEKNRKLNDLLDALDFNQVVIFVKSVSRA
AELNKLLSECNFPSICIHSGMNQEERLKRYKGFKEGHNRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNDVQERFEVDIKELPEQIDT
ATYMPS
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaaacaagggacgatgtgtacgaggaggagcttgtcgattatgaagaagaggag
gagaaggcccccgactccgcagctaaagtcaatggcgaagcccctaagaagggatatgtt
ggaattcacagttcagggttcagagatttccttttgaagccagagcttcttcgagctatt
gtggactccgggtttgagcatccgtctgaagtgcaacatgaatgtattcctcaagctatc
ctgggaatggatgtcatttgtcaagctaaatctgggatggggaaaactgctgtttttgtt
ctatcaactttgcagcagattgaccctgtagcaggccaagtatctgcactcgttctttgc
catactagagaattagcttaccagatctgtcatgaatttgagaggttcagtacgtacttg
cctgatctcaaggttgctgtcttctacggtggtgtcaatatcaaacttcacaaagatttg
ctgaaaaatgaatgccctcacattgttgttggaacgcctggaagaatattggcattggca
agggataaagacctctccttgaagaatgtgaggcatttcatccttgatgaatgtgacaaa
atgcttgaatcactagacatgaggagagacgtgcaagagattttcaagatgacgccgcat
gataagcaagtgatgatgttttctgcaacactcagcaaagaaatccgcccggtttgcaag
aaatttatgcaagatcctatggaaatatatgtcgacgatgaagccaagttgacactgcat
ggtctagtacagcactacatcaagttaaccgaggcagagaaaaaccgcaagttgaacgac
ctccttgatgcactggacttcaaccaagttgttatattcgtcaagagcgtaagcagagcc
gctgaattgaacaagttactttcagagtgtaattttccctctatatgcatccattctgga
atgaaccaagaagaaaggttgaagcgctacaaaggattcaaggagggtcataacaggatt
cttgtggccacagatttggtcggcagaggaatcgatattgagcgtgttaacatcgttatc
aactatgacatgccagattctgctgacacttatttacacagggttggcagagctggtagg
tttggcaccaaaggtctggcaattacatttgtttcatctgcagcggactctgatgttctt
aatgatgttcaggaaaggtttgaggttgatataaaggagcttcctgaacagattgatact
gccacatacatgccgtcttaa
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