Prunus dulcis (almond): 117629387
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Entry
117629387 CDS
T07328
Name
(RefSeq) probable RNA helicase SDE3 isoform X1
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
pdul
Prunus dulcis (almond)
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117629387
03036 Chromosome and associated proteins [BR:
pdul03036
]
117629387
Enzymes [BR:
pdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
117629387
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
117629387
Chromosome and associated proteins [BR:
pdul03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
117629387
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MOV-10_beta-barrel
AAA_11
Motif
Other DBs
NCBI-GeneID:
117629387
NCBI-ProteinID:
XP_034217849
LinkDB
All DBs
Position
1:5055284..5071444
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AA seq
692 aa
AA seq
DB search
MSIFLEVLKCLFCIEDERENYDYNQIPRQTYDSKISDRNRSPPLTSTNQSPAFYNYKAPS
PPSQPVKSPFSSSSSSPKPPTSSSKPLQSSYISTSSPSPKFPTSSSSSTFPKPPTSSSKL
PQSTFVNPSSSNASPFILEFPTSVSKLQQSSSVDQRSALPKPPTSSSKLPQSTLVSPSSP
FLQLRTPSYRPSPPILSTSSSKPPQASSKSHSSSPNPPTSSKPSPSSGPPASPTTLPPIF
KQVLSPASSDVINEKGKKSYVSVEKGSLPIFTIPEDFKDLIKNDIVPKVLKQPLSPTTYK
DYFAALLYAEEFYHEKWADFNMKNVTLKLQKASVYKNLDKEEKTFVEFMIDSVPENRPFL
LSRDLVYVRPSGTNAERFQGIINRIIRSNLVLVEFEDEFYDYHYSTQKYDVSFSFNRVCL
KRAHQAVQTASDTLFQNFLFPDGVSRTSIPIAPALLSGHHKLDAKQLSAVRQILSIKGSP
PYLVAGQLCVERIKGSPRYLVAGQLCVERNVFRPSRTGAVVCEAVHQLCQTSLKNRILIC
APSNRCCDGIMRSLLKVIPESDMFRANAAFREKDEVPDDILPSCLYEDPYFSCPPTEKLK
KFRVIFSTLMSSFRLHDKGLTSGHFSHIFLVDASSAIEPETAVALTNFAEKSTTVIVTGQ
PGDNSRWVRADMARRRGLKISYFERLFKSKAI
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgtcaatttttcttgaagttttgaaatgcctcttttgtattgaagatgagcgtgagaat
tatgattataatcaaattcccagacaaacttatgattctaaaatttccgatagaaaccgc
tccccacccttgacttctactaatcaatctccagccttctataactataaagccccatca
cctccatctcaaccagtcaaatctccctttagttcatcttcatcatcccctaagcctccg
acatcttcatcgaaaccgctgcaatcttcttatatcagtacatcttctccatctcctaaa
ttcccaacatcttcttcttcttcaacattccctaagcccccaacatcttcatctaagctg
cctcaatcaacttttgttaatccatcttcttccaatgcatctccatttattcttgaattc
ccaacatctgtatctaaattacaacaatcttcttctgttgatcagcgttcagcattgcct
aaacccccgacatcttcatctaagctgccccaatccactcttgttagtccatcttcacca
ttccttcaactccgaacaccttcatatagaccatctcctcctatactgtctacatcctcc
tctaaaccacctcaggcttcatcaaaatcacattcatcatcgccaaatcctccaacatct
tcaaaaccatcaccatcctcgggaccgccagcgtctcccactacgctccctccaatcttt
aagcaagttctatccccagcctcctcagatgtaataaatgaaaaggggaagaaaagttat
gtatcggttgaaaagggttcgttacctatattcacgattcctgaggatttcaaagatttg
atcaagaatgacattgtgcctaaagttcttaaacagcctctgtctcccacgacatataag
gattactttgctgctctgttatacgctgaagagttctaccatgagaaatgggctgatttc
aatatgaagaatgtgacactgaagttgcaaaaagcatcagtttacaaaaatctagacaag
gaagagaaaaccttcgtagaatttatgattgattctgttcctgaaaatcggccattcctt
ttgtcgagggacttagtctatgtgaggccatcaggtacaaatgctgagcggtttcagggc
attataaatcgcattattaggagcaatcttgtattagtggaatttgaagatgaattttat
gattatcattattcgacccaaaaatatgatgtcagcttctcattcaatcgagtatgtttg
aaaagagctcaccaagcagttcaaacagcatcggatactttgtttcagaacttcctcttt
cctgatggtgtttcccgtacgagcattcccatcgcaccagcgctgctgtctggccatcac
aaacttgacgccaaacaattatctgctgttcgtcaaattttaagcattaagggctcacca
ccttacttggtggctggccagctttgtgttgaaaggattaagggctcaccacgttacttg
gtggctggccagctttgcgttgaaaggaacgtttttaggccgtcgagaactggagcagtt
gtttgtgaagcagtgcaccagttatgtcaaacctcactcaaaaataggattctgatatgt
gctcctagtaaccgctgttgtgatgggattatgagaagcttgttgaaagtgattccagag
tcagatatgtttcgagccaacgctgcattccgtgagaaagatgaggtgcctgatgacatc
ctcccatcatgcctttatgaagacccttatttctcttgtcctccaactgagaagcttaaa
aaattcagggtgattttctcgactctcatgagtagctttcggctacatgataaaggccta
acttctggacattttagtcatatttttctggtggatgcttcatctgccattgagccggaa
acagcagtggccttaactaattttgcagaaaaaagtaccactgttatagtcactggtcaa
ccaggagataattcacgttgggttcgcgcagacatggcaaggcgaaggggactgaagatt
tcatacttcgagagacttttcaagtcaaaggccatatag
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