| Entry |
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| Name |
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11 isoform X1
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| KO |
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| Organism |
pdul Prunus dulcis (almond)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:pdul00001]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117629604
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:pdul03019]
117629604
Enzymes [BR:pdul01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117629604
Messenger RNA biogenesis [BR:pdul03019]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117629604
mRNA degradation factors
3'-5' decay
Ski complex
117629604
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
6:4448105..4460990
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| AA seq |
1347 aa
MDPIVAANGLSFRVGFSGHSGHLRLEPLSTDESSNPVNSLPDFILPPAFARETPESIKEY
IEDTYLLPRLDPEVFSPEKVGRQWDFDWFDNANVPLEPSLPRTVVVPTWELPFRSQNDGS
VGGQWEPKSVQVDVSELIVGAQESGSLPRVAGPAKDFVRGSINNRPFRPGGLDDSKSLER
VLPDGASNGEWVHELLIGGSAQAVPPSFKQGLDLGDLKAYPCSWNVYKDQSPLKSTSDEK
VDLQSELSVQFDDLFKKAWEEDVVEFEGDGQLSGSESVKSEDEANEVDVARNSCEPELSV
LDEILSVEAKSRFNETDEDGEKNPEAWAISGGTEWIAENFYDLIPDKALDYPFELDKFQK
EAIYYLEKGDSVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGK
FDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVERGVVW
EEVIIMLPRHINIVLLSATVPNKVEFADWIGRTKQKKIRVTGTTKRPVPLEHCLFYSGEL
YKICESESFIPQGFKAAKDAFKKKNMSAATGGSGSHAPAPVSHDGARTQKQSSNWGKQKK
QSGPQNLGNFSKAGGSNQNNGNGMNNWGLRRSDASLWLSLINKLSKKSLLPVVIFCFSKN
RCDKSADSMYGIDLTSSSEKSEIRVFCDKAFSRLKGSDRTLPQVVRVQNLLHRGIGVHHA
GLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQLLPGEY
TQMAGRAGRRGLDKIGTVIVMCRDEILEESDLKHVIVGSATRLESQFRLTYIMILHLLRV
EELKVEDMLKRSFAEFHAQKKLPEQQQLLMRKLAQPTKTIECIKGEPAIEEYYDMYSEAE
TYYTEILEAVMQSSVAQKFLTAGRVVVMKSQSGQDHLLGVIVKPPSSSNKQYIVLVLKPE
LQTPLASDNLQDSKNTDFPQGYFMAPKSKRAIEEDYFPGVTSRKGSGVINIKLPHQGSAA
GVRFEVREVNNKDFLCICNCKIKIDQVRLLEDVSSHAYSKTVQQLLGTKSNGNKYPPALD
PMEDLKLRDVNHVETYYKWTNLLQKMAENKCHGCTKLEEHIILAREIKRHKEEVNALKYE
MSDEALQQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELICTECLFENQLDD
LEPEEAVALMSAFVFQQKNTSEPSLTPKLSQAKQRLYNTAIRLGELQGHFKVQINPEEYA
RENLKFGLVQVVYEWAKGTPFADICELTDVPEGMIVRTIVRLDETCREFKNAASIMGNSA
LYKKMETASNAIKRDIVFAASLYVTGV |
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| NT seq |
4044 nt +upstreamnt +downstreamnt
atggatccgattgttgcagcaaatgggctctctttccgagtcgggttctccggtcacagt
ggccacctcaggctcgagcctctttccaccgacgagagctccaaccccgtcaattcactc
cctgatttcattctgccgccggcatttgctagggaaacgcctgaatcaataaaagagtat
atagaggacacgtatctcttgccaagattggaccctgaagtattttcgccggaaaaggtc
gggaggcagtgggattttgactggtttgataacgcaaatgtacccttggagccctcattg
ccgcggacagttgtggttcctacatgggaattaccatttaggagtcaaaatgatgggtcg
gtgggaggtcaatgggaacctaaatccgtgcaggtggatgtatcagaacttatagtagga
gctcaagagtctggttccttgccacgcgtggctggaccagcgaaggattttgtacgggga
agtatcaacaaccgcccttttcgcccaggaggcttggatgattccaaatctctagaaaga
gttcttcctgatggtgcttctaatggcgagtgggttcacgaacttctgattggtggctct
gctcaggccgtacctccaagctttaagcaaggattggaccttggtgatctcaaggcctat
ccatgctcgtggaatgtgtataaggatcaaagtccactgaagagtacgtcagatgaaaag
gtggatttgcagagtgagttgtccgtgcagtttgatgacttgttcaagaaggcctgggaa
gaggatgttgttgaatttgaaggagatggtcaattgtcaggatcagaatctgttaagtca
gaggatgaagcaaacgaggttgatgttgccagaaattcatgcgagcctgagttatctgtg
ttagatgagattttgtcagttgaggcaaagtcaagattcaatgaaactgatgaagatggt
gaaaaaaacccagaggcttgggcaattagtggaggtacagaatggattgcagagaatttt
tatgatcttattcctgacaaggcacttgattatccttttgaattggataaattccagaag
gaggctatttattatcttgaaaagggggactctgtctttgttgctgctcacacatcagct
ggaaagacagttgttgcagaatatgcatttgctttagcatcaaaacattgcaccagagct
gtgtatactgctcctattaaaaccatcagcaatcaaaagtacagagatttctgtggaaaa
tttgatgttggacttctcactggtgatgttagcttgaggccagaggcatcttgtctcatt
atgaccacagaaatcttaaggtcaatgctttatcgcggtgcagacataatacgtgatatt
gaatgggttatctttgatgaggtgcactatgtcaatgatgtcgaaagaggtgttgtttgg
gaagaagttattataatgcttccaagacacattaatattgtcctcctttcagctacggta
ccaaacaaagtggagttcgcggactggattggacggacaaagcaaaagaaaatccgtgtt
actgggactacaaaaagaccagtaccattggagcactgcctattttactccggagaactt
tacaaaatatgtgaaagtgaaagctttattccccaggggttcaaagctgcaaaagatgca
ttcaagaaaaagaatatgagtgctgcgactggtggtagtggatcacatgctccagctcca
gtttctcatgatggggctcgaactcaaaaacaaagttctaactggggaaaacaaaagaag
caatctggtccccaaaatttggggaatttctccaaagctggtggatcaaatcaaaacaat
ggaaatggcatgaacaattggggtttaaggagatcagatgcctctttgtggttgtcactt
attaacaagctctcgaagaagtctctgttacctgtggttatattttgtttctcaaagaat
cgctgtgataagtcagctgatagtatgtatgggattgacctcacaagtagttctgagaaa
agtgagattcgtgtgttctgtgataaagcattttcgcggctaaagggatctgacaggact
ttaccacaggttgtcagagttcaaaaccttcttcatagaggaattggtgtccatcatgct
ggactgcttccaattgttaaggaagttgttgaaatgcttttttgtcgtggtgtaatcaag
gttttgttctcaacagagacatttgcaatgggagtcaatgcaccagctagaacggttgtt
tttgatacattaaggaaatttgatggcaaggaatttagacaattactgcctggagaatac
actcaaatggcaggccgtgcaggccgaagaggacttgataaaattggtacagttattgta
atgtgccgtgatgaaatcctagaagaaagtgatttaaagcatgtcatagttggaagtgca
accaggcttgaatctcagtttcggcttacctatattatgatcttgcatctccttcgtgtt
gaggaactgaaggtggaggacatgcttaaaagaagttttgctgaattccatgctcagaag
aaactaccagaacagcagcaacttctgatgcgaaagcttgcacaacctacaaaaactatt
gagtgtataaaaggtgaaccagctattgaggagtattatgacatgtactcagaagctgag
acatattacacggaaatattggaggcagttatgcagtcctctgttgcccaaaaatttctt
acagctgggagagtggtagtcatgaaatcacaatcaggccaggaccacttgcttggagtc
attgtgaagcctccttcttcaagtaataagcaatacattgttttagtgctgaaacctgaa
ttacaaactcccctggctagtgataacttgcaagatagtaaaaacaccgattttccacaa
ggttatttcatggcaccaaaatctaaacgtgctattgaagaagattattttcctggcgtc
acttctcgcaaaggatcgggtgtcatcaacataaaattaccacaccagggttctgctgct
ggggtaaggtttgaggttagagaagtcaataacaaggattttttatgcatatgcaattgc
aagataaagattgaccaagttcggcttcttgaagacgtttccagtcatgcttactccaag
acagttcaacagctgttgggcacaaaatccaatggaaataagtaccctccagccttagat
ccaatggaagatctgaagttgagagatgtgaatcatgtggaaacatactacaagtggact
aacttattgcaaaagatggcagagaataagtgccatggttgtacaaagttggaggagcac
attattttagcaagagagataaagagacacaaagaggaagttaatgctctaaagtatgaa
atgtcagatgaggcactgcaacaaatgccagattttcaaggccggatagatgttctgaag
gaaattggatgtatagatgccgaccttgttgttcaaataaaaggccgtgttgcatgcgaa
atgaattcaggggaggagttgatttgcacagagtgtttgtttgagaaccaactggatgac
ctggaaccagaagaagctgtggcgttaatgtctgcctttgtgtttcagcagaagaatact
tccgaaccttctcttactccaaaactgtctcaggcgaaacaaagattgtacaacacagca
ataagactgggcgagcttcaaggccacttcaaagttcaaataaatccggaggagtatgcc
cgagagaatctcaagtttggtcttgttcaagtcgtttatgagtgggcaaagggcactcca
tttgcagatatttgtgaacttacggatgttcctgaaggcatgatagtgcggaccattgtc
agacttgatgagacgtgccgcgagttcaaaaatgctgcatctattatgggtaattctgct
ctgtacaagaaaatggaaaccgcttcaaatgcgataaagcgtgatattgtatttgcggct
agcttatatgtcactggagtttaa |
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