Prunus dulcis (almond): 117631058
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Entry
117631058 CDS
T07328
Name
(RefSeq) uncharacterized protein LOC117631058 isoform X1
KO
K06100
symplekin
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117631058
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdul03021
]
117631058
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117631058
Transcription machinery [BR:
pdul03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117631058
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
117631058
U7-dependent histone pre-mRNA processing factors
117631058
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Adaptin_N
HEAT_EZ
HEAT_2
PRO8NT
Motif
Other DBs
NCBI-GeneID:
117631058
NCBI-ProteinID:
XP_034219879
LinkDB
All DBs
Position
6:24817000..24828520
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AA seq
1332 aa
AA seq
DB search
MVGMMMVANSNERLASLMDSAILASDIPSKLDRLRQSKQDLVVQQDPALLSGLLPRLFEL
QSDRFSPVRKFATEMLGEIGLMHVELLPEIVPSLINVLSDGTPAVARQAITSGIHLFRCV
LEKVSIQGLHSSELDSLLESSWAWVLKLKEEIYSIAFRPGSGGIRLLALKFVESVILLYT
PDPNGSPEPPAHEGDLVEFNISWLRGGHPLLNVGDLSIEASKSLGLLLDQLRFPTVKSLG
NLVIVVLINSLSAIAKKRPAFYGRILPVLLGFDPSSAVINGVHVSGAHHALKNAFLTCLK
CTHKGAAPWRDRLVGALRKLKAGGLVEQAIPQASKINGSVEDGLDDSPITKEEKPTIKTS
NAVQINSGRKRLGALDSSDLAEDEDVSGKRAKSTSSVSEESVKECDRNISVSQDDISSSG
TTTSRGDSDSGPVQQLVAMFGALVAQGEKAVGSLEILISSISADLLAEVVMANMYNLPPN
LPGAEGDESLVNMGIVGGDSRVKYPPSFIADVLSLTSTFPPIAALLDTHLSVSNDIVKLE
VEEEQVASVVDSAVASTGMDYEAENSTLPTGLPSSSEAFSSEMGKGCQPVPSDVHDMEYL
ESEIPGLDSSACNSGLSEPFVASSSALMDVEDASQEQVTSSGQGTQLNVLPSLSADKSEE
LSPRAAVADVNSLVSSTATSVGLSSHLVLPKMSAPVVILADEEKDQLQKLAFTRIIEAYK
QIAIAGGSQLRCSLLINLGVEFPLELDPWKLLQKHILADYTNNEGHELTLRVLYRLFGEA
EEEHDFFSSTTATSVYETFLLNAAETLRDSFPASDKSLSRLLGEVPYLPNSVLKLLECMC
SPGSSDTTEKETQGGDRVTQGLSTVWSLILLRPPFRDPCLKIALQSAVYHLEEVRMKAIR
LVANKLYPLSSIAQRIEDFAIEMLLSVKCGDATERTDAEGSKTESQKDSDLEKHSNEPPS
VSGNSKDISSDTHQSCNSQSVPSLSIAEAQRCLSLYFALCTKKHSLFRQIFAVYGSASKA
VKQAVHRHIPILVRTMGSSPDLLEIISDPPSGSENLLMQVLHTLTDGIVPSRELVFTVRK
LYDSKLKDVEILIPILPFLPKEEVMLIFPQLVNLQLDKFQAALTRTLQGSSNSGPLLAPA
EILIAIHGIDPDRDGIPLKKVTDACNACFEQRQIFTQQVLAKVLNQLVEQIPLPLLFMRT
VLQAIGAFPALVDFIMEILSRLVSKQIWKYPKLWVGFLKCAFLTKPQSFGVLLQLPPAQL
ENALKRTAALKAPLVAHASQPDIRSSLPRSILVVLGIVSDSQAQTSQSQAGDASNSDKEA
VAEKSKESSSAC
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atggtgggcatgatgatggtcgcgaactccaacgaaagactcgcgagtctcatggactca
gccatcttggcctctgacataccgtcgaagctcgaccggctacgccaatcaaagcaagat
ttggtggtccaacaagaccctgcgttgctctctgggctccttcctcgcctcttcgagctt
cagtccgaccggttcagtccggttcgaaaatttgccactgaaatgcttggcgaaattgga
ctgatgcacgtagaattattaccagaaattgtaccttcgttaattaatgttttgagtgat
ggaacaccggctgttgctcgacaagccatcactagtgggattcatttatttcgttgtgtt
ctcgaaaaggtttcaattcagggtttacattctagtgaattggacagtttgcttgagtca
tcttgggcatgggtgttaaagttgaaggaggaaatatactcgatagcttttcggccagga
agcggggggataaggttgctagcactgaaatttgttgaatcagtcattcttctttacact
cctgatcctaatggctccccagagccccctgctcatgaaggggacttggtggaatttaat
atatcttggcttcgtggtggccatcccctactcaatgttggagatttgtcaattgaggct
agtaaaagtttgggtttattgcttgatcaactcaggttcccaaccgtgaaatcgcttggt
aacttagtgatcgttgtgcttattaatagtctttcagcaattgcgaagaagaggcctgca
ttctatggtcgcattttgcctgtattacttggatttgatccctcaagcgctgtcattaat
ggggtacatgtctctggggcgcaccatgccttgaaaaatgccttcctcacctgcttaaaa
tgtacacacaagggtgctgcaccgtggcgggatcgtttagttggggccttgagaaagttg
aaagctggagggttggtagagcaagccattcctcaagcttccaagattaatggaagtgtg
gaggacggactagatgattctccaattactaaggaggagaaacccacaattaaaacatct
aatgctgtgcaaattaattctgggaggaaacggttaggagcactggatagtagtgacctt
gcagaggacgaagatgtttctggaaagcgtgccaaatcaacatctagtgtctctgaggaa
tcagtgaaagagtgcgataggaatatttctgtgtctcaagatgacatttcttcaagtgga
actaccacttctagaggagatagtgatagtggacctgtgcagcaacttgttgctatgttt
ggtgcattggtagctcaaggtgaaaaagcggttggttctttagaaattcttatctcaagt
atctctgctgacttgctagcagaggttgtgatggctaatatgtacaaccttcctcccaat
cttcctggagctgaaggagatgaatctctggtgaacatgggtatagttggtggtgattct
cgagttaaatatccaccatcatttattgctgatgttctctcacttacaagtactttccct
ccaatagctgcactcctagatactcatctgtcagtgtccaatgatatagtgaaactcgaa
gtggaggaagaacaggtagcatctgtagttgatagcgctgttgcaagtactggcatggat
tatgaagctgaaaattctacgttgccgactggtttaccatcttcatctgaagcattttca
tccgaaatggggaagggttgtcaacctgtgccatctgatgttcatgatatggaatatctt
gagagtgaaatacctgggctggattcttctgcttgtaatagtggattatcagaacccttc
gttgcatcctcatcagctttaatggatgtagaagatgcaagtcaagagcaagttaccagt
tcgggtcaagggacacaacttaatgtacttccatcactgtcagcggataagtctgaggag
cttagcccaagagctgccgttgcagatgtcaatagcctggtttcttcaacagcaacttca
gttgggttgtcctctcatcttgtcttgcccaagatgtcggcaccggtagtcatccttgct
gatgaagaaaaggatcagttgcagaaattggcttttacgcgcatcatcgaggcatataag
caaatagctattgctggaggttcacaattacgatgctctctccttataaatttaggagtt
gagttccctttggagttagacccatggaaactgctgcagaagcatatcttggcagattat
acgaataatgagggacatgagttgacattgcgtgtcctatacaggttgtttggagaggca
gaagaggaacacgatttcttttcttcaacaactgctacttctgtatatgaaacgttcctt
ttgaatgcggcagaaacacttagagattcttttccagcatctgacaaatcattaagcaga
ttacttggcgaggttccttatttaccaaattcagttctgaaattattggagtgcatgtgc
tcacctggaagcagcgacacaactgagaaggaaacacaaggtggggatcgagtgactcaa
ggtctcagcactgtgtggagcctgattttgctgaggcctcctttccgcgatccctgctta
aaaattgctttacagagtgcagtttatcatctggaggaagtgcgtatgaaggctatacgt
ctggttgcaaacaagctttatcctttgtcatccattgctcaacgaatagaagatttcgca
attgaaatgttgctttctgtaaaatgtggtgatgcaacggaaagaacagatgctgaagga
tcaaaaacagaatcacagaaggattctgatttggaaaagcattcaaatgaacctccatct
gtgagtggtaacagtaaagatatctcctccgatactcatcaatcatgcaattctcaaagt
gtgccatccctttcaattgctgaggcccagcggtgtttgtcattatattttgctctatgt
acaaagaagcattccctttttcgccaaatatttgctgtttatggaagtgcatcaaaggcc
gttaagcaggcagttcatcgtcacattccaatactagtacgtactatgggatcgtcacct
gatcttcttgaaattatttctgatcctccaagtggaagcgagaacctcctgatgcaggtt
ttgcatacactgacagatgggatagttccttctcgggaactggtttttactgttaggaag
ctatatgattcaaaactgaaggatgtagagattcttattccaatattgccctttttaccg
aaagaagaggttatgcttatatttccccaacttgtgaatcttcaactggataagttccaa
gcagcactaactcgcacactacagggatcatccaattctggtcctcttcttgctccagct
gaaatcttgattgctatccatggaattgatcccgacagagatggaattccactaaagaag
gtcacagatgcatgcaacgcctgctttgagcagaggcagatattcacccaacaagttctt
gccaaagttttgaatcaattggttgagcagattccccttcctttactgtttatgcgtaca
gtattacaagccataggtgcttttcctgcactggtggattttataatggagatcctctct
cgacttgtgagcaagcagatatggaaatacccaaagttgtgggtgggattcttgaagtgc
gcgttcttgacaaagcctcagtcatttggcgtcctgcttcagctacctccagcacagcta
gaaaatgcactgaagagaactgcagctctgaaagcaccgttggttgctcacgctagccaa
ccggacatccgatcttcacttccaaggtccatattggtagttctaggaattgtttcagat
tctcaggcacaaaccagtcagtctcaggcgggagatgcaagcaactctgataaggaggca
gtcgcagagaaatcaaaggagtcatccagtgcttgttga
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