Prunus dulcis (almond): 117631900
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Entry
117631900 CDS
T07328
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117631900
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117631900
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117631900
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117631900
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
Motif
Other DBs
NCBI-GeneID:
117631900
NCBI-ProteinID:
XP_034221128
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All DBs
Position
6:complement(6029871..6037056)
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AA seq
664 aa
AA seq
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MSGLLNSSLNGSGSNLPDSSGRFATSFSGQSGAASPVFHHTGTIQGFNNIHGSFNVPNMQ
GTLTSRNSTLNNVPSGGVQQPTGSLSGGRFTSNNLPVALSQLSHGSSHGHSGVTNRGGIS
VVGNPGFSSSTNGIGGSIPGILPTSAAIGNRNAVPGLGVSPILGNAGPRITSSMGNMVGG
GNIGRSISSGGGLSVPGLASRLNLSANSGSGSLTVQGQNRLMSSVLPQGSPQVISMLGNS
YPNAGGPLSQSHVQVNNLSSMGMLNDVNSNDSSPFDINDFPQLTSRPSSAGGPQGQLGSL
RKQGLGVSPIVQQNQEFSIQNEDFPALPGFKGGNAEYGMDIHQKEQLHDNTVSMMQSQHF
SMGRSTGFNLGGTYSSHRPQQQQQHAPSVSSSGVSFSQVNNQDLLHLHGSDIFPSSHSTY
HSQTSGPPGIGLRPLNSANTVSGMGSYDQLIQQYQQHQNQSQFRLQQMSAVNQSFRDQGM
KSMQTAQSAPDPFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPWS
DEPAKGDPEFSVPQCYYAKQPPALHQGYFSKFSVETLFYIFYSMPKDEAQLYAANELNNR
GWFYHKEHRLWFIRVPNMEPLVKTNTYERGSYHCFDPNTFETIRKDNFVLQYEALEKRPV
LPQH
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgtcggggttacttaattcttctctaaacggatcaggctcaaatcttccagacagtagt
gggcgatttgccacatctttctctggtcagtctggtgccgcttctcctgtttttcatcac
acaggaactattcagggattcaataacattcatggaagcttcaatgttcccaacatgcaa
ggtacattaacatcaagaaactcaacgttaaataatgttccttctggtggagtccaacaa
ccaactggaagcctttctggtggacggttcacatcaaataatcttcctgttgctttgtct
cagttatctcatggaagctcccatggacattcgggagtcactaatagaggaggtataagt
gtagtaggaaaccctggatttagtagtagcacaaatggaattggcggttctattcctggg
attctccctacatctgctgcaattggtaaccggaatgctgttccaggattgggtgtctcc
ccaattttgggaaatgcaggtcctcggattacgagttctatgggaaacatggttggtggg
ggcaacattgggaggagtatcagctctggtggaggcttgtcagtgcctggtctcgcttct
cgtctaaatttaagtgcaaatagtggatctggaagtttaaccgtccaagggcagaatcgc
ttgatgagtagtgtgctaccacaagggtctccacaggtaatttcgatgctaggaaattcc
tatcctaatgctggaggtccactttctcaaagccacgtacaagtgaataatttgagctct
atgggaatgttgaatgatgtgaattctaatgacagttctccttttgacatcaatgatttc
cctcaattaacaagtcgtcctagttctgcaggagggcctcaagggcaattgggttcactg
cgaaaacaaggtcttggtgttagtcctattgttcaacagaatcaagagttcagcatccaa
aatgaagattttccagctttgccgggatttaaaggtggtaatgctgaatatgggatggat
attcaccagaaagagcaacttcatgacaatactgtgtcgatgatgcaatctcagcacttc
tcaatgggaaggtccactggatttaacttgggggggacttattcttctcatcgtccccaa
cagcaacaacaacatgctccatcagtcagcagtagtggtgtctccttttcgcaagtaaac
aatcaggatcttctccatttgcatggttcagacatattcccatcatcacattcaacctat
cactcacagactagtggacctcctggaattggattaagacctctaaattctgcaaataca
gtttctggtatgggttcgtatgaccagcttatccagcagtatcaacaacaccaaaatcaa
tcccagtttcgcctgcagcagatgtcagctgtcaatcaatcttttagagatcagggaatg
aaatcaatgcagacagcgcaatcagctccagacccatttggtttgcttgggttgttaagt
gtgataaggatgagtgatcctgatctaacatcccttgcacttgggattgatttgactacg
cttgggttaaacttgaattcaacagaaaatctacacaagacttttggttctccatggtct
gacgagccagctaagggtgatccagagtttagtgttccacaatgttattatgctaaacaa
ccgcctgcactacatcaagggtatttttcaaagttttccgtggaaacgttgttttatatc
ttttacagcatgcccaaagatgaagcgcaactatatgctgccaatgaactcaataataga
ggctggttttatcacaaggagcatcgtctatggttcataagggtccccaacatggagcca
ctcgtcaagacaaacacgtatgagagaggatcttatcactgctttgatcctaacacattt
gaaacgatccgaaaggataattttgtcttgcagtacgaggcgttggagaagagaccagtc
ttaccgcagcattga
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