Prunus dulcis (almond): 117631946
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Entry
117631946 CDS
T07328
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117631946
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117631946
03041 Spliceosome [BR:
pdul03041
]
117631946
03009 Ribosome biogenesis [BR:
pdul03009
]
117631946
03016 Transfer RNA biogenesis [BR:
pdul03016
]
117631946
Enzymes [BR:
pdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117631946
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
117631946
Spliceosome [BR:
pdul03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117631946
Complex C
U4/U6.U5 tri-SnRNP related factors
117631946
Ribosome biogenesis [BR:
pdul03009
]
Eukaryotic type
Pre-60S particles
Helicases
117631946
Transfer RNA biogenesis [BR:
pdul03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
117631946
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
ResIII
DEXQc_Suv3
Helicase_C
ATPase_2
nSTAND3
AAA_27
Motif
Other DBs
NCBI-GeneID:
117631946
NCBI-ProteinID:
XP_034221181
LinkDB
All DBs
Position
6:complement(8254869..8262092)
Genome browser
AA seq
997 aa
AA seq
DB search
MEMGSLKRKSEEVAAEAEGASQKQQKKENGCVTLDDEAVACLHDVSYPEGFVVPPSSSAS
AGEASEPAKKFNFTLDPFQSEAIKCLEKAESVMVSAHTSAGKTVVASYAIAMSLRNKQRV
IYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIDPNASCLVMTTEIWRSMQYKGSEVTRE
VAWIIFDEVHYMRDRERGVVWEESIVMAPKNARFVFLSATVPNAKEFADWLAKIHRQPCH
IVYTDYRPTPLQHYIFPSGGNGLFLVVDEKGKFREDSFQKALNALVPAADGAKKKDSGKW
QKGLIMGKAAEESDIFKMVKMIIQRQYDPVILFSFSKRECESLAMQMSKMDLNGDNEKEN
IEKVFWYAMDMLSDDDKKLPQVSHMLPLLKRGIGVHHSGLLPILKEVIELLFQDGLIKCL
FATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDERGICILMV
DEKLEPSTAKMMLKGSADCLNSAFHLSYNMLLNQLRSEDGNPENLLRNSFYQFQADRAIP
NLEKQRKDLEQERDSIIIEEEDSVKNYYNLLQQYKSLKKELRGIVLSPKYCLPFLKPGRL
VSIQCARNDEASPSFSVEDPVTWGVVLNFQRVKNVSEDDASKKPEGSDYTVDVLTRCGVS
ADGVAKKTIKIFPLKEPGEPVVVSISISQINTMSRLCMVIPNDLLPLQARENTLKRVLET
LSRFDKEKIPMLDPEEDMKIESSSYRKVSRRIEALENLFDRHEVANSPLIEQKLKVFHMK
QELAAKIKSIKKTMRSSTALAFKDELKARKRVLRRLGYVTSDDVVELKGKVACEISSAEE
LTLTELMFNGVFKDIKVEEMVSLLSCFVWQEKLKDATKPREELDLLFSQLQDTARRVAEV
QLECKVEIDVDSFVSSFRPDIMEALYAWAKGSKFYEIMSVTPVFEGSLIRAIRRLEEVLQ
QLIQAAQSIGETELESKFEEAVSKIKRDIVFAASLYL
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggaaatgggatcactgaagagaaagtcggaggaagtggcggccgaggcagaaggagct
tcacagaaacaacaaaaaaaggagaatggttgtgtaaccttggacgacgaagccgtggcg
tgcttgcatgacgtgtcttaccctgagggttttgtcgttcctccctcttcttctgcttct
gctggagaagcttcggagcccgccaagaaattcaacttcactctcgacccttttcagtcc
gaagccataaagtgcctggaaaaagccgagtcagtcatggtgtctgctcatacatccgct
ggaaaaactgttgtggcatcgtatgccattgcaatgtctttaagaaataagcaacgggtg
atatacacttcaccaatcaaagctctgagcaaccaaaagtatagagagttcaaagaggag
ttttcagatgttgggttgatgactggggacgtaacaatagaccccaacgcttcctgcttg
gttatgaccacagaaatctggcgtagcatgcagtacaaagggtcggaggtgacacgggaa
gtggcttggataatctttgatgaggtacattacatgcgtgatcgggagagaggtgtggtg
tgggaagagagcattgttatggctccaaagaatgcacggtttgttttcctctcagcaacc
gtgccaaatgctaaggaatttgctgattggctcgcaaagattcaccgtcagccttgtcac
attgtctataccgattataggccaactcctctgcagcattatatttttccttctggaggg
aacggtttgttcttagtagttgatgaaaaagggaaatttcgtgaggacagctttcaaaaa
gctctaaatgctcttgtccctgctgcggatggtgctaagaagaaggatagtggaaagtgg
cagaagggtttgatcatgggcaaggctgccgaggaaagtgatatcttcaagatggtgaaa
atgataattcaacgacagtatgaccctgtcatacttttcagctttagcaaaagggagtgc
gaatctcttgcaatgcagatgtcaaaaatggatctaaatggggacaatgagaaagaaaac
atagaaaaggtcttctggtatgctatggatatgctttcggatgacgataagaagttaccc
caggtttcacatatgctaccccttttgaagcgtggaattggtgtgcatcattccggcttg
cttcccattctgaaggaagtgattgaacttttatttcaggatggtctgatcaagtgttta
tttgccacagagaccttcagcataggattgaacatgcctgcaaaaactgttgtgtttacc
aatgtccggaaatttgatggtgataagttcagatggctgtccagtggagagtatatacaa
atgagcggccgtgctggtcgccgtggtattgatgaacgtgggatatgcatactcatggta
gacgagaagctggaaccatctactgctaagatgatgctcaaaggaagtgctgattgtttg
aacagtgcttttcatttgagctacaacatgcttctgaatcaattacgcagcgaagatggt
aatccagaaaatttgcttcgtaactcattctatcagtttcaagctgatcgtgccatcccc
aatcttgagaaacaaagaaaggaccttgagcaagagagggattcaattataattgaagaa
gaagatagtgtaaagaattattacaatctattacaacaatacaagagtttgaaaaaggaa
cttcgtggtattgtgctttctcccaagtactgcttaccatttctgaaacctggtaggctt
gtgtcaatccaatgtgctaggaatgatgaagcttccccctctttttccgttgaagaccct
gtcacatggggagtggtacttaattttcaacgggtgaaaaatgtttccgaagacgatgca
agtaaaaaacctgaaggttcagactacacagtggatgtcctgacaagatgtggggtgagt
gcagatggagttgcaaagaaaaccatcaaaatttttcctctaaaagagccaggagaacct
gttgttgtttccatttccatatctcagataaatactatgagtagactttgtatggtcatt
ccaaatgatcttttgccactacaagcccgagaaaacacgctgaagagagttcttgaaact
ctttcaagatttgataaagaaaagattcctatgctagatccagaagaagatatgaagatt
gaaagtagttcatacaggaaggtgtctcgtaggattgaggctttagagaacctctttgac
aggcatgaagttgcaaattctccacttatagaacaaaagcttaaggtttttcacatgaag
caagaattggctgccaagataaagtcgatcaagaaaacaatgcgctcttccactgcattg
gcttttaaagatgaacttaaggcaagaaagcgggttcttcggaggctaggatatgttaca
agtgatgatgttgtggagttgaagggtaaagttgcttgtgaaatcagtagtgcagaggag
ttgaccttgactgagctcatgttcaatggggtttttaaggacataaaggtggaagagatg
gtgtctcttctctcatgttttgtgtggcaggagaaacttaaggatgctacaaaaccaagg
gaagaacttgacctgctcttttctcagttacaagatacagctcggagggttgctgaggtt
cagcttgagtgcaaggtcgaaattgatgttgacagctttgtgagttcatttcggcctgat
attatggaggcattgtatgcttgggcgaaagggtccaaattctacgagatcatgtcagtt
acacctgtttttgagggaagcttgatcagggctattaggagattagaggaagttcttcag
caacttatacaagcagcccagtctattggagaaactgagctcgagtcaaaatttgaggag
gctgtttcgaaaatcaagagggacattgtctttgcagcttccctatacctataa
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