Prunus dulcis (almond): 117633584
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Entry
117633584 CDS
T07328
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52C-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
pdul
Prunus dulcis (almond)
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117633584
03041 Spliceosome [BR:
pdul03041
]
117633584
03036 Chromosome and associated proteins [BR:
pdul03036
]
117633584
Enzymes [BR:
pdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117633584
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117633584
mRNA cycle factors
Common to processing body (P body) and stress granule
117633584
Spliceosome [BR:
pdul03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
117633584
Chromosome and associated proteins [BR:
pdul03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
117633584
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
117633584
NCBI-ProteinID:
XP_034223133
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All DBs
Position
7:19649452..19653719
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AA seq
613 aa
AA seq
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MTMSWSDAVTESTPKPTRQPRPSYVPPHLRHSGSSYGYGSFTESAQYGFRSSYTGPGRQP
GRAGTARGGRGRSRGGRFWAQPPPNPSPDLNPSDNVSEKFDQLKVTEEDSNGGINFDAYE
DIPVEASGADIPPPVDTFHEIDLGECLNHNIKTRCKYVKPTPIQRHAIPVVMAGRDLMAC
AQTGSGKTAAFCLPIISGVLNNNSLGRSPTRGGAHTVCPTALILSPTRELAGQIHDEAKK
FAYQSGVKIVVAYGGAPISQQFRNLERGVDILVATPGRLVDMIERSRVSLRMIKYLALDE
ADRMLDMGFEPQIRRIVEQMDMPCPGARQTLLFSATFPNEIQRLAADFLSNYIFLAVGRV
GSSTDLIAQKIEFVEDMDKRSHLMDHLHSQQANGSHGKPALTLVFVETKRGADALENWLC
MNGFPAIAIHGDKVQMERERALRSFKCGSAPILVATDVASRGLDIPHVAHVINFDLPKGI
DDYVHRIGRTGRAGNSGLATAFFNDKNQPLAKGLIELMQESNQAVPSWLNEYAEGSQTYS
SGGGGGRSQRSGGSRFGGYDFRRSAQSGRESYYGPSSYGYGDCSVGTSAASYNDATVPYG
YGNYETIVAGGWE
NT seq
1842 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgtcttggtctgatgctgttactgagtcaaccccgaagcccactcgccaacct
cggcccagctacgtacctccacatctcaggcacagtggcagctcctacggatatgggtcc
tttacagagtcagcccagtacggctttcggtcaagctacaccggtcccggtaggcaaccc
ggtcgggccggcacagctcgcggcggccgaggtcgcagccgtggtggtcgcttttgggct
caaccacccccaaacccaagcccagacctaaacccgtctgacaatgtctctgagaaattt
gaccaactcaaagtcactgaagaagatagcaatggcggtatcaattttgatgcctacgaa
gacatcccagttgaggcgagtggcgccgacattccaccgccggtggacacctttcacgag
atcgatttgggtgagtgtttgaaccacaacatcaaaacgcgatgtaagtacgttaagccc
acgcctattcagcgccacgcgattccagtagtcatggctggccgggacttaatggcttgt
gctcaaactgggtctggcaaaacggcggcgttttgcttacccatcattagtggtgtcttg
aacaataacagtttgggaaggtcgccgactcgtggtggggctcatactgtgtgtcctact
gcgctcattttgtctccgactagagagttggctggtcagatacatgatgaagctaagaag
ttcgcttatcagagtggggtcaagattgttgtggcttatggtggggcaccaatttctcag
cagttccgtaatctggaaagaggtgttgatatcttagttgccactccagggcgcttagtg
gacatgattgagaggtcacgagtttcacttagaatgatcaaatatttggcattagatgag
gctgataggatgttggacatgggttttgagccacagattagaaggattgttgaacaaatg
gacatgccttgccctggtgctagacaaacgttgcttttcagtgctacattcccaaatgag
atacagaggcttgctgcagattttctttcaaactacatatttctggcggttggaagagtt
ggatcaagtactgatcttattgcacaaaaaatcgaatttgttgaggatatggacaaacga
agccacttaatggatcatcttcatagccagcaggccaatggaagccatggcaagcctgct
ttaacgttggtgtttgtggagaccaagagaggtgcagatgctttagaaaactggttatgc
atgaatggtttcccagcaattgcaattcatggtgacaaagtgcaaatggagagggaacga
gctttgagatcattcaagtgtggctctgctccaatattggtggcaacggatgttgcttca
cgaggtttagacatccctcatgttgcccatgtcatcaattttgacctcccaaaaggcata
gatgactacgttcacaggattggtcggacgggacgtgctggaaattctggtcttgcaact
gccttcttcaatgacaagaaccagccacttgcaaagggactaattgagttgatgcaggag
tcaaaccaggcggttcctagttggcttaacgaatatgctgaaggatcacagacttatagt
agtggtggtggtggtggtaggagccaaaggtctggtggcagtaggtttggtggctatgac
ttccgtaggtctgcccaatcggggcgtgagagttattacggtccaagcagctatggttat
ggagattgttctgtgggtacttctgctgcttcctataatgatgctactgttccatacggc
tatggaaattatgaaactattgttgctggtgggtgggaatag
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