Prunus dulcis (almond): 117633670
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Entry
117633670 CDS
T07328
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117633670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117633670
03041 Spliceosome [BR:
pdul03041
]
117633670
03009 Ribosome biogenesis [BR:
pdul03009
]
117633670
03016 Transfer RNA biogenesis [BR:
pdul03016
]
117633670
Enzymes [BR:
pdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117633670
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
117633670
Spliceosome [BR:
pdul03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117633670
Complex C
U4/U6.U5 tri-SnRNP related factors
117633670
Ribosome biogenesis [BR:
pdul03009
]
Eukaryotic type
Pre-60S particles
Helicases
117633670
Transfer RNA biogenesis [BR:
pdul03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
117633670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
nSTAND3
ATPase_2
Motif
Other DBs
NCBI-GeneID:
117633670
NCBI-ProteinID:
XP_034223240
LinkDB
All DBs
Position
1:complement(4650992..4660387)
Genome browser
AA seq
988 aa
AA seq
DB search
MEESPMVAKRKEPEASEITENPIHESPQKRRHLTRTCVHEVAVPSEYTSTKDESVHGTLS
NPVYNGKAAKIYEFTLDPFQQISVACLERNESVLVSAHTSAGKTAVAEYAIAMAFRDKQR
VIYTSPLKALSNQKYRELSQEFKDVGLMTGDVTISPNASCLVMTTEILRGMLYRGSEVLK
EVAWVIFDEIHYMKDRERGVVWEESIIFMPPAVKMVFLSATMSNATEFAEWICNLHKQPC
HVVYTDFRPTPLQHYVFPVGGNGLYLVVDENEQFREENFVKLHDTFSKQKSDGHRSSNGK
ASGRTAKGGTASGGSDIFKIVKMIMERKFQPVIIFSFSRRECEQHAMSMSKLDFNTQEEK
DDVEHVFRKAVLCLNEEDRQLPAIELMLPLLQRGIAVHHSGLLPVIKELVELLFQEGLVK
ALFATETFAMGLNMPAKTVVFTAVKKWDGDSHRYIGSGEYIQMSGRAGRRGKDDRGICII
MIDEQMEMNTLKDMVLGKPAPLVSTFRLSYYSILNLLSRAEGQFTAEHVIKNSFHQFQHE
KALPDIGKKVSNLEQEVAILDASGEAEVAEYHKIKLDIAQLEKKMMTEITRPERVLYFLL
PGRLVKIREGGTDWGWGVVVNVVKKPSSTLGSLPSRGGGYIVDILLHCSPGSSENNSQPK
PCPPRPGEKGEMHVVPVQLPLISALSKLRISIPSDLRPLEARQSILLAVQELGTRFPQGL
PKLNPVKDMGIEDPEIVELVNQIEALEQKLYAHPLHKSQDVQQIKCYQRKAEVDHEIQQL
KSKMRESQLQKFRDELKNRSRVLKKLGHIDTEDVVQLKGRAACLIDTGDELLVTELMFNG
TFNDLDHHQIAALASCFIPGDKSNEQIQLRTELARPLQQLQESARRIAEIQHECKLEVNV
DEYVESTVRPYLMDVIYCWSKGASFADVTQMTDIFEGSIIRSARRLDEFLNQLRTAAHAV
GEVALEEKFAGASESLRRGIMFANSLYL
NT seq
2967 nt
NT seq
+upstream
nt +downstream
nt
atggaagaatctccaatggttgcgaaacgaaaagagcctgaagcgtcagagatcacagaa
aaccccatccatgaatctccccagaagcgacgccatttgacccgaacatgtgtgcatgag
gttgcagttcccagtgagtacacttcgaccaaggatgagtcggttcatggaaccctctcg
aatcctgtgtataatggcaaggcagccaagatatatgaattcacccttgacccatttcag
cagatatctgtggcatgcttagaacggaatgagtcggttttggtttctgcccatacttca
gcaggtaagactgcagtcgcagagtatgcaattgccatggcttttagagataagcagagg
gttatatatacttcaccactgaaggctttgagcaatcagaagtatagagagctcagccag
gagtttaaagatgttggattgatgactggagatgttacaatttcacctaatgctagttgt
ttggtcatgacaactgagatccttaggggaatgctttacaggggttcggaggttttaaag
gaagttgcctgggttatctttgatgaaattcattacatgaaggatcgcgaaagaggggtt
gtttgggaagagagtattatatttatgcctccagctgttaaaatggtttttctttcagcc
acaatgtccaatgccactgagtttgcagagtggatttgtaatttgcacaaacagccttgc
catgtggtgtacacagattttcgaccaactcctctgcagcattatgtttttccagtgggt
gggaatgggttgtatcttgtggtggacgagaatgaacagttcagggaggaaaattttgtg
aagctgcatgatactttttcaaagcagaaaagtgatggtcacaggagttcaaatggcaag
gcaagtgggagaactgcaaaaggtgggactgcatctgggggttctgatatcttcaaaatt
gttaagatgataatggaacggaaatttcagccagttataattttcagcttcagtagaaga
gagtgtgaacaacatgcgatgtccatgtctaagcttgattttaacacccaagaagaaaag
gatgatgttgaacatgtttttcgtaaggcagtgctctgcttaaacgaggaagacaggcag
ttgcctgctattgagttaatgttgccactccttcagcgaggcattgctgttcatcattct
ggccttcttcctgttatcaaggaactggttgaacttcttttccaggaaggccttgtaaag
gcactttttgctactgagacatttgcaatgggattaaacatgccagcaaaaactgttgtt
ttcacagctgttaagaagtgggatggtgatagtcatcgatatataggatctggtgagtac
attcagatgagtggaagggctgggcgtcgtggcaaagatgatcgtggtatttgtatcata
atgattgatgagcagatggaaatgaacacactcaaggacatggttttgggtaaaccagct
cctttagttagtactttcagactcagctactactcaattttaaatttgctgagccgtgcg
gaaggccaattcacagctgaacacgtgataaagaattcattccaccaatttcagcacgaa
aaggctttacctgatatagggaaaaaggtttcaaatcttgagcaggaagtggcaatactt
gatgcgtcaggagaggctgaagttgctgagtatcataagataaaacttgatatagcccaa
cttgaaaagaaaatgatgacagagataacgaggcctgaaagagttctatattttcttctt
cctggtcgcctggtcaagattagggaaggtggtacagattggggctggggagttgtagtt
aatgtggttaaaaagccgtcatccacattaggctcactgccttcacgcggtggtggttat
atagtggatattttgcttcactgttctcctggttcaagtgagaacaattcacaaccaaaa
ccatgccctcctcgtcctggagaaaagggtgaaatgcatgtagtccctgtccaattgccc
ctgatttctgctctaagcaaactcagaatatccattccttctgatttgcggccattggag
gcgaggcaaagtattctgcttgcagtccaggagctgggaactcgttttccacaaggcctt
ccaaagctgaatcctgtaaaggatatgggcattgaagatcctgaaattgttgagttggtt
aatcaaatagaggccctcgaacagaaattatatgcacatccgctgcataagtctcaagat
gttcagcagattaaatgttatcaacggaaagcagaggtggatcatgaaattcaacaactt
aagtccaagatgcgtgagtcccagcttcaaaagtttcgtgatgaactcaagaaccgttcg
cgagtattgaagaagcttggtcacattgatactgaggatgttgtccagttaaaggggcga
gcagcctgcttgatagacacaggagatgaactccttgttactgaactgatgtttaatggt
acgttcaacgatttggatcatcatcaaattgcggctcttgcaagttgttttattccaggc
gataaatcaaatgagcagatacaattgaggacagagcttgctagaccattacaacaactc
caagagagtgcaagaagaattgcagagatacaacatgaatgcaaattagaagtgaacgtt
gatgagtatgtggaatcaacagtgaggccatacttgatggatgtgatttattgttggtcg
aagggtgcaagttttgcggatgttacacaaatgacagatatatttgagggtagtatcatt
agaagtgctagaagacttgatgaatttttgaatcagttgcgtactgccgctcatgctgta
ggagaagttgctttagaggagaaatttgctggagcaagtgaaagccttcggcgaggtatc
atgtttgccaactccctttatctgtag
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