Prunus dulcis (almond): 117633829
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Entry
117633829 CDS
T07328
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X1
KO
K11292
transcription elongation factor SPT6
Organism
pdul
Prunus dulcis (almond)
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdul03021
]
117633829
03036 Chromosome and associated proteins [BR:
pdul03036
]
117633829
Transcription machinery [BR:
pdul03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
117633829
Chromosome and associated proteins [BR:
pdul03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
117633829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Spt6_S1
HHH_9
HTH_44
Tex_central_region
HHH_3
SH2
MRP-S34
DHQS
Motif
Other DBs
NCBI-GeneID:
117633829
NCBI-ProteinID:
XP_034223524
LinkDB
All DBs
Position
7:2974010..2983133
Genome browser
AA seq
1631 aa
AA seq
DB search
MGKAVVSDEEDEVELDEDEREPHHGDAVDDRDGDDEDDEEEGPDEYEKDDFIVDDVDEED
EQEEEEDRADSDEERQRKKKRKKKEEYVLDEDDYELLEDNNVIAPRRKAGKFKRLKKAQR
YGEGEPGGLSDEEEFVGSGKSGRTAEEKLKRTLFGDDEGPPLEDIAEEEEPAEAEDDGEV
GEEDEMADFIVDEEFDETGAPVRQRKLKKKKSRQAPGVSSSALQEAHEIFGDVDELLQLR
KQGLDSSEWRERRLEDEFEPIVLSEKYMTEKDDQIRELDVPERMQIYEESTGSPPLDRIS
MDDESTWIYNQLASGTVPLFSKTGLGNSISRDDIIRFLDLHHVQKLDIPFIAMYRKEECL
SLLKDPEHLELEDESQDKNDRPSVLKWHKVLWTIKELDRKWLLLQKRKNALQSYYNKRFE
EESRRIYDETRLNLNQQLFESIMKSLKAAESEREVDDVDTKFNLHFPPGEAGVDEGQYKR
PKRKSLYSICSKAGLWEVASKFGYSSEQFGLQLSLEKMRMDELEDAKETPEEMASDFTCA
MFENPQAVLKGARHMAAVEISCEPCVRKYVRSNYLDIVELSTSPTPDGNVAIDAFHQFAG
VKWLQRKPLNRFEDAQWLLIQKAEEEKLLQVTIKLPEDRLNKLISDFNEYYLSDGVSKSA
QLWNEQRKLILQDALFNFLLPSMEKEARSLLTSRAKNWLVMEYGKVLWNKVSVGPYQRKE
NDGSDDEAAPRVMACCWGPGKPATTFVMLDSSGEVLDVLYTGSLTLRSHNVNDQQRKKND
QERVLKFMTDHQPQVAVLGAVNLSCVRLKDDIYEIIFKMVEENPRDVGHDMDGLSIVYGD
ESLSRLYENSRNSSDQLPAQSGIVKRAVALGRYLQNPLAMVATLCGPGREILSWKLNPFE
NFLTPDEKYAMVEQVMVDVTNQVGLDVNLAISHEWLFAPLQFISGLGPRKAASLQRSLVR
SGAIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYALAQ
ELAKDVYDVDGGNDEEDALEMAIEHVRDRPNYLKNLDVEEYAKTKKRENKIETFCDIRRE
LIQGFQDWRKQYEEPSQDEEFYMISGETEDTLAEGRIVQATVRRVQAQRAVCALESGLTG
MLMKEDYSDDSRDISELSDRLNEGDILTCKIKSIQKNRYQVFLVCRESELRNNRHQNTQN
VDAYYHEDRRSLQSEQEKANKEKELAKKHFKPRMIVHPRFQNITADEAMKFLSDKDPGES
IIRPSSRGPSYLTLTLKVYDGVYAHKDIVEGGKDHKDITSLLRIGKTLKIGEDTFEDLDE
VMDRYVDPLVAHLKSMLNYRKFKRGAKAEVDELLKIEKLEYPMRIVYCFGISHEHPGTFI
LTYIRSTNPHHEYVGLYPKGFKFRKRMFEDIDRLVAYFQRHIDDPQHESGPSIRSVAAMV
PMRSPATGGSTNEGGWRGQSFDRDRSSTPSSRTGRNDYRNGGSRDGHPSGLPRPYGGRGR
GRGTYNNRGNSTGNERQDSGYDAPTWGADSKDRDDGLGNFPGAKVQNSPGREAFPGGWGA
GGSGSGGSNWGGGSGWGQGSGGAGGWGGAGANDAAADNGTSGWGSDPKIKGSDNGSSGWG
SEPKRGGGGGW
NT seq
4896 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaagccgtcgtctctgacgaagaagatgaggtcgagctcgacgaggacgagagg
gaaccccatcacggcgacgcagtcgatgaccgggatggcgacgatgaagacgatgaagaa
gaagggccagatgaatatgagaaggatgattttatagtagatgatgttgatgaagaagat
gagcaagaggaggaagaagatagggcagacagtgatgaagagaggcagaggaagaagaaa
agaaagaaaaaagaggagtatgtccttgatgaagatgactatgagctcctagaggacaat
aatgtgattgccccccgaaggaaggctgggaaatttaagcggctgaaaaaagctcagagg
tatggtgagggggagcctggtggattatctgatgaggaggagtttgttggtagtggtaaa
agtggaagaactgcggaggaaaagcttaagcgtaccttatttggtgatgatgaaggtcct
ccacttgaggacatagctgaagaagaggaaccagcagaagcagaagatgatggagaagtt
ggtgaagaggatgaaatggcagactttatagttgatgaagagtttgatgagactggagct
cctgtgagacagaggaagcttaaaaagaaaaaatctaggcaggcaccaggagtatcatcc
tctgctttgcaggaagcccatgaaatatttggtgatgttgatgaattactgcagctccgt
aagcaaggtttggattccagtgaatggagggaaaggaggcttgaagatgaatttgaacca
attgttctttctgaaaagtatatgacagagaaggatgaccagatccgggagcttgatgtt
ccggaaagaatgcagatatatgaggaaagcactggttctcctccactggatagaattagt
atggatgatgagagtacctggatttataatcaacttgcaagtggtacagtacctttgttt
agcaagacaggcttggggaattctataagcagggatgacatcatcagatttttggacttg
catcatgtgcagaagttggacattccctttattgccatgtatcggaaagaagagtgccta
agcttattgaaagatcctgaacaccttgagttggaagatgaaagtcaggataaaaatgac
aggccatctgtactcaagtggcacaaggtgctttggaccattaaggagctggacagaaaa
tggctgttgcttcagaagcggaaaaatgctttacaatcttactacaataaacgatttgag
gaagaatctcgacgtatatatgatgaaaccagacttaatttaaatcagcagctttttgaa
tcaattatgaagtcgctgaaggctgcagaatcagagagagaggttgatgatgttgacacc
aagtttaacttgcatttccctccgggtgaggcaggagtggatgagggacagtataagagg
cccaaaaggaaatcactttatagcatttgcagtaaggctggcttgtgggaggtggcaagc
aagtttggttacagctctgagcagtttggactgcaattatctctagaaaaaatgagaatg
gatgagttggaggatgctaaggagaccccagaggagatggcttcagactttacatgtgca
atgtttgagaatcctcaagctgtgctcaaaggagctaggcatatggcagctgttgaaata
agttgtgagccatgtgtcaggaagtatgttcgaagcaactacttggatattgttgagtta
tcaacaagcccaacacctgatggaaatgtggcaatagatgcttttcatcagttcgcaggg
gtgaaatggttgcaaagaaagccattaaatagatttgaggatgcgcaatggctgcttatc
cagaaggctgaagaggagaagcttctccaagttactattaagttgccagaagacagatta
aataagctgataagcgacttcaatgagtactatcttagtgatggtgttagtaaatctgca
caactgtggaatgagcagcggaagttgatattgcaggatgccctttttaattttcttttg
ccttcaatggagaaagaagcaagatccttgttgactagtagagctaagaactggttagtc
atggaatatggaaaggttctttggaataaagtctctgtgggaccatatcagcggaaggaa
aatgacggctcagacgatgaagctgcaccaagggtcatggcttgctgttggggccctggg
aagccagcaactacttttgtgatgttagattcatctggggaggtgctagatgtactttac
acggggtcccttactctacgctcccacaatgttaatgatcagcaacgaaagaaaaatgat
caagaacgtgttttgaagttcatgactgatcatcaaccacaagttgctgtcctaggagct
gttaacttgtcttgtgttcgcctaaaagatgatatttatgagataatttttaaaatggtg
gaggagaatcctagagacgttggccatgatatggatggcctaagcattgtatatggggat
gaatctttgtctcgcctgtatgaaaattctcggaattcatctgatcagttacctgcacaa
tcaggcattgtcaagagggctgtggctcttgggcgttatcttcaaaatccgttggcaatg
gttgccacactttgtggaccaggaagagaaatcttatcttggaaactcaatccttttgag
aactttctcaccccagatgagaagtatgcgatggttgaacaggtcatggtagatgtcaca
aaccaggtaggccttgacgtaaatctggctataagccatgaatggttatttgcaccactg
caatttatttctgggcttggacctagaaaggcagcatctttgcagagatcgttggtaaga
tctggcgcaatatttactcgaaaggattttgtgacagcacacgggcttggtaaaaaggtg
tttgtcaatgcagttggtttcttgcgtgttcggcggagtgggttggctgctagcagcagc
caatttattgatttgttggatgatacgaggattcatccagaatcctatgctcttgcacaa
gaattggccaaagatgtttatgatgtggatggtggcaatgatgaggaggatgctttggag
atggctatagagcatgtcagggatcgacctaattatctaaaaaaccttgacgttgaagag
tatgctaaaaccaaaaagcgtgaaaataagatagaaacattttgtgatataaggagagaa
ttaatacagggttttcaggattggcgtaaacaatatgaagaaccaagtcaggatgaagag
ttctatatgatttcaggtgaaactgaggatacccttgccgaaggaagaattgtgcaggcc
acagttcgcagggtgcaagctcaaagggcagtttgtgctcttgaatctgggttgactggt
atgcttatgaaagaagactattcagatgattccagggatatttctgagttatctgacaga
ctgaatgagggtgacatcctcacttgcaagatcaaatcgattcaaaagaataggtatcaa
gtgttcctagtttgcagagagagtgagctgagaaataaccgacatcagaacacacagaat
gttgatgcctattaccatgaagaccgaagaagtctacagagtgagcaagagaaagctaat
aaggagaaggagctcgcaaagaagcatttcaagccaaggatgattgttcatcctcgtttc
cagaatataactgcagatgaagcaatgaagttcttgtctgataaggatcctggggaaagt
attattcgtcctagttctcgtgggccttcatatttaaccttaactctcaaggtttacgat
ggagtttatgctcacaaagacatagttgaaggtggaaaggaccataaggacatcacaagc
ttactccgcattggtaagaccctgaaaattggggaggacacatttgaggatttggatgag
gtaatggatcgttatgttgatcctttagtagctcacttgaagtcaatgctaaattatcgc
aagttcaagaggggcgcaaaagcagaggttgatgaacttttgaagattgagaagttggag
tatcctatgaggatagtttattgttttgggatatcgcatgaacatccaggcactttcatt
ctgacctatatacggagtacaaatccacaccatgagtatgttggtttatatcctaaggga
ttcaaattcagaaaaaggatgtttgaggacattgatcggcttgtagcatattttcagcgc
catattgatgaccctcagcatgagtcaggaccatcaattagatcagttgctgctatggtg
ccaatgcggagccctgcaactggtggttcaactaatgagggtggttggagaggccagtct
tttgacagggatcggtcatctacgccgagttcacgaacaggccgaaatgattacagaaat
ggtggcagtagagatggacatccaagtggcctacctagaccatatggtggccgtggccgt
ggtcgaggaacatataacaacagaggaaatagcaccggcaatgagaggcaggattctggt
tatgatgctccaacatggggtgcagattccaaagacagggatgatggcttgggcaacttt
cctggtgcaaaggtccaaaactcacctggaagggaagctttccctggtggttggggtgct
ggtggaagtggcagtggaggcagcaattggggtggcggcagtggctggggtcaaggaagt
ggtggagcaggagggtggggtggagctggtgcaaatgatgctgctgctgataatgggact
tcaggatggggttcagacccgaaaataaaaggttcggataatgggtcttcaggatggggt
tctgaacccaaaagaggcggtggcggtggttggtga
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