Prunus dulcis (almond): 117633990
Help
Entry
117633990 CDS
T07328
Name
(RefSeq) THO complex subunit 1 isoform X1
KO
K12878
THO complex subunit 1
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03013
Nucleocytoplasmic transport
pdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117633990
09122 Translation
03013 Nucleocytoplasmic transport
117633990
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117633990
03041 Spliceosome [BR:
pdul03041
]
117633990
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
117633990
Spliceosome [BR:
pdul03041
]
Complex C
Other components
EJC/TREX
117633990
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
117633990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
efThoc1
zf-RVT
Herpes_UL92
Motif
Other DBs
NCBI-GeneID:
117633990
NCBI-ProteinID:
XP_034223760
LinkDB
All DBs
Position
7:893313..908206
Genome browser
AA seq
682 aa
AA seq
DB search
MEVFRRAILQPGPPESFALQTVQQVIKPQKQTKLVQDENQLLENILRTLLQELVSSAVQS
GEQIMQYGQSIDDGDTTQGHIPRLLDIVLYLCENEHIEGGMIFQLLEDLTEMSTMRNCKD
VFGYIESKQDILGKPELFARGKLVMLRTCNQLLRRLSKANDVVFCGRILMFLAHFFPLSE
RSAVNIKGVFNTSNETKYEKDPPDGISIDFNFYKTFWSLQEHFCNPPSLTLAPTKWKKFT
SGLMVVLNTFEAQPLSDEEGDANSLEEEAANFSIKYLTSSKLMGLELKDPSFRRHILVQC
LILFDYLKAPGKSEKDLPSDSMKEEIKSCEERVKKLLEMTPPKGENFLHKIEHILEREKN
WVWWKRDGCPPFEKQPAEKKVVQEGAKKRFSVGNGEKIRFWEDLWLKEGILKDLFPRLSS
LSRRKNQSIACFANNHEMPLNWDFDFRRNLSEAEIAEVVILLDILGKVRLYGSRSDRRSW
EIEERGSFSCKSFRSFLLCTTRDVFPPFISIWKAKTPPKIQFFVWLAANGRINTCDCIQR
RQPKMCLSPSWCVLCKENAENIDHLFIHCSYSLKLWWRMLGALRAEWVIPKGCFELLSIN
LRVSGKGKGKRAGILHDCLVHAIFGNIWMERNRRIFQGHIGVRVEELWDRIKFWASLWAS
VSGQFKDYHYSTIMRDMMAVLR
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atggaagtgttcaggagggcaatattgcaacctggcccaccagaaagttttgctctacag
acagttcaacaagttataaaacctcagaaacagacaaagttagtccaagatgagaatcaa
ttgttagaaaatatcctccggacattgcttcaggaactggtgtcttctgcagtacagtct
ggggagcagataatgcagtacggtcaatcaattgatgatggagatactacccaaggacat
attccacgtcttcttgatattgtgttgtatctttgtgagaacgaacacattgaaggtggc
atgatatttcagctgttggaagacttaacagaaatgtctactatgagaaactgcaaagac
gtttttggttatatagagagtaaacaagatatattaggaaagccagagctttttgctcga
ggaaaacttgtgatgttgagaacatgcaatcaacttcttcgtcgcctgtcaaaggcaaat
gatgtggtattttgtggacgaattctaatgtttttggctcattttttcccattatctgag
cgttcagctgtgaatataaaaggagtttttaacacatcaaacgagacaaaatatgagaaa
gacccccctgatggaatttccatcgatttcaacttctacaagacattttggagtttacag
gaacacttttgtaaccctccttccttaactcttgctcctaccaagtggaagaaatttaca
tccggtttaatggttgtcctgaatacatttgaagctcaaccattaagtgatgaagaggga
gatgccaatagtttggaggaggaggcagcaaatttcagcataaaatatcttacgagcagt
aaactaatgggtttggagttgaaggatccgagtttccgacgtcatattcttgtgcagtgc
ctcatattgtttgattatctgaaggcccctggaaagagtgaaaaagatttgccttccgat
agcatgaaagaggaaataaaatcttgtgaggagcgtgtgaaaaagctgcttgaaatgact
ccacccaagggggagaattttcttcataaaattgagcatatattagaacgtgaaaagaat
tgggtatggtggaaacgtgatggttgtccaccatttgagaagcagccagcagagaagaaa
gtggtccaagaaggagccaaaaagcgattttctgttggaaatggggagaaaattagattt
tgggaggatctttggctgaaagaagggattctaaaagatctgtttcctagactctcttcc
ttgtctaggagaaaaaatcaaagtatagcctgttttgctaacaatcatgagatgcctctc
aattgggattttgatttcagaaggaatttgtccgaggctgaaatagcagaagtggtaata
cttttggatatattggggaaggtgagattatacggttctagatcggatcggagatcttgg
gagattgaggagcggggttctttttcctgcaagtctttcaggtcttttcttctctgtacc
acaagggatgtcttcccccctttcatctcaatctggaaggcaaagactccgccaaaaatt
caatttttcgtgtggctggcagcaaatggcaggattaatacttgcgattgcattcaaagg
aggcaaccaaagatgtgcttatccccctcttggtgtgttctttgcaaagagaatgcagaa
aacattgatcacttgttcattcattgttcgtattccctaaaattatggtggaggatgttg
ggtgctctcagagcggagtgggtgattcctaaagggtgttttgagctccttagtatcaat
ctgagggtttcggggaaggggaaggggaagagagctggaatccttcacgattgtctagtt
catgctattttcgggaatatctggatggagcgaaatcgaagaatttttcagggtcatata
ggagtaagggttgaggaattatgggacagaattaaattttgggcatccctttgggcttcg
gtttcggggcagttcaaggactatcactactctaccatcatgagagacatgatggcagtc
ttaagatga
DBGET
integrated database retrieval system
