Prunus dulcis (almond): 117633992
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Entry
117633992 CDS
T07328
Name
(RefSeq) protein RRP6-like 2 isoform X1
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117633992
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117633992
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
117633992
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Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
PMC2NT
Motif
Other DBs
NCBI-GeneID:
117633992
NCBI-ProteinID:
XP_034223775
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All DBs
Position
7:1635404..1646259
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AA seq
910 aa
AA seq
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MPLTTTMSEEAMKVDQPQPPRTEALQTLTKGPLSSSISKLSGSSRGIPSNQDFYFYRNFD
EFKVPIEHITEQSQLMLGSVGSSAPIWGKKMAFPQDLDDAYDWLVNVNDEVLERFDSSVD
EFKRIRKEAEEPKRPMIADFDSENGFQLVCGKKKKGPSGSASANGDSTQVSSVKVATKDK
KTVGTKPKVPFHIPTIRRPQEEFNILVNNSNQPFEHVWLQRSEDDQRFLHPLDKLSVLDF
VDTDVGDVEPVKPPSLESMPFKLVEEVKDLKELAAKLRGVNEFAVDLEHNQYRSFQGMTC
LMQISTRTEDFIVDTLKLRIHVGPYLREVFKDPAKRKVMHGADRDIMWLQRDFGIYICNL
FDTGQASRVLKMERNSLEYLLHQLCGVTANKEYQNADWRLRPLPEEMVRYAREDTHYLLH
MYDLMRTMLCLMPKESENLDTPLVEVYKRSSDICMHLYEKELLTENSYLHIYGLQGAGFN
AQQLAIVSGLCEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTTSKLKRLVKSKHPYVE
RNLASVVSIIGHSMQNAAFFEPAVEHLKLGHAGMATEENILANEGSEAVLPDESGSNSIK
GDISAASPASPPHKMEDTELGCGASELVRGGQESSLEHPGENRKGKIECGSNASVLPRQN
IVPWQSREASSNACLLDSTKVTGVSVQVQKKPSCAFSSLLGSGVPKRKFDADRKNKEDKL
EQIRSSMNFPFHSFTGSSEQSKPIIEAPATSSEIPQSEGPLTASPERSNLDDIITLENDS
DVGKPINDSVASALERNGEDEPMSLSDLSSSFQKCFQSRKQNKKPREVEKSQESGGLQVK
PFDYEAAKRGVIFGAKPVKEAGEGVRSLNSGGKKKSLGGIVSNDDGSKELAQGRRRQAFP
ASGNRSATFR
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgccattgacaaccaccatgagcgaagaagccatgaaggtggaccaacctcagccaccg
cggaccgaagccctccaaaccctaaccaaaggtcctctctcctcgtcgatatccaagctc
tcaggctcatcgcgaggcataccttccaaccaagacttctatttctaccgcaacttcgac
gaattcaaggtcccgatcgaacacatcacagaacagtcgcagttaatgctcggctccgtt
ggctcttcggcgcctatttggggcaaaaagatggctttccctcaagacttggacgacgcg
tacgattggctggttaacgtcaacgacgaggtgctcgaaaggtttgactcgtcggtggac
gagttcaagaggatcaggaaagaggcagaggagcccaagcggccgatgattgcggatttt
gactcggaaaatgggtttcaattggtctgtgggaagaagaagaaggggcccagtggctcg
gcgagtgctaatggtgattcgactcaggtctcgagcgtgaaggtggctaccaaggacaag
aagactgtggggacgaagcccaaggtaccgtttcatataccgacaattcggaggcctcag
gaggagttcaacattttggttaataattcaaaccagccgtttgagcatgtttggttgcag
agaagtgaggacgatcagcgttttcttcatccccttgataagctttctgttctggatttt
gttgacactgacgttggggatgttgagcctgtaaaaccaccctcattagagtctatgcca
ttcaagcttgtggaggaggtcaaagatctgaaagagctggcagctaagctgcgtggtgtt
aatgaatttgcggttgatttggaacacaatcaatatcgatcctttcaaggaatgacttgc
ttgatgcaaatttctactagaactgaagattttatagtagatactttgaagcttagaatt
catgttggtccatatcttagggaagttttcaaggaccctgccaagagaaaggtgatgcat
ggagcagatcgagatatcatgtggctccaacgtgattttggcatttatatctgcaatttg
tttgatactggccaggcctcaagggtattgaaaatggagagaaatagtttggaatatctt
ttacatcagttatgtggtgttactgctaacaaagaataccagaatgcagattggagatta
cgccctcttcctgaggagatggtcagatatgccagagaagatacacactatctgttgcac
atgtatgatttaatgagaacaatgttatgtttgatgccaaaggaatcagaaaacttggac
actcctttagtagaggtttacaagcggagttctgatatatgcatgcatctgtatgagaaa
gagcttttgacagaaaattcctatctccatatatatgggttgcaaggtgctggtttcaat
gctcagcagcttgcaattgtttccggtctttgtgagtggcgggatgttgttgctcgtgca
gaggatgaaagtactggctatatattaccaaacaaaactcttcttgaaattgctaaacag
atgcctgtcaccactagcaagttaaagcgattggtgaaatcaaagcacccgtacgttgag
cgcaatcttgcttctgtggttagcatcattgggcattctatgcaaaatgctgcttttttt
gagcctgcggtcgaacatctgaaattgggacatgcgggtatggcaactgaagagaatata
ttggcaaatgaaggatctgaagccgtcttacctgatgagtctggcagcaattcaattaaa
ggtgatatatctgcagcttcacctgcttctccgccacataaaatggaggatactgaactt
ggatgtggtgcctcggaacttgtaagaggtggacaagaaagctctcttgagcatcctggt
gaaaataggaaaggaaagattgaatgtggtagcaacgcttctgtgcttcctagacagaat
attgttccgtggcaaagcagagaagcaagcagcaatgcctgtttattagattcaacaaag
gttactggagtaagtgttcaggtgcaaaagaagcctagctgtgcctttagttccctgttg
gggagtggagttccaaaaagaaagtttgatgctgatagaaagaacaaggaagacaagttg
gagcaaattaggtcgtcaatgaactttcctttccactcatttacgggaagcagtgagcaa
tcaaagccaatcatcgaagcaccagctacaagttccgaaattccccaatctgaagggcct
ctcactgcatcacctgagaggtctaatttagatgatatcataacactggaaaatgattca
gatgtgggtaaaccaataaatgattcagtggcatctgctttggagaggaatggagaagat
gaacctatgtctctctctgatttgtcctcaagcttccaaaaatgttttcagtcacgtaag
caaaacaagaaacccagagaagtggagaaatcccaagaatctggtggtttgcaggtgaag
ccttttgactatgaagcagcaaagagaggggtcatttttggtgctaagccagttaaagaa
gctggggaaggtgtaaggagcctgaattcaggagggaagaaaaaatctttaggcggtata
gtctcaaatgatgatgggtcaaaagaactagcacaaggtagacgacgacaagcttttcca
gcaagtggaaatagaagtgcaacgtttcgttaa
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