Prunus dulcis (almond): 117634021
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Entry
117634021 CDS
T07328
Name
(RefSeq) polyadenylation and cleavage factor homolog 4 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117634021
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdul03021
]
117634021
03019 Messenger RNA biogenesis [BR:
pdul03019
]
117634021
Transcription machinery [BR:
pdul03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117634021
Messenger RNA biogenesis [BR:
pdul03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
117634021
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Motif
Other DBs
NCBI-GeneID:
117634021
NCBI-ProteinID:
XP_034223809
LinkDB
All DBs
Position
7:complement(13003208..13010885)
Genome browser
AA seq
1098 aa
AA seq
DB search
MEMESSRRPFTRSTEPVKKPRLADDRGLNPNPNPNGRAFAQRPGGANPVLSRFRVTDRDS
ESNDASRGGGYVPQPLQHQELVSQYKTALAELTFNSKPIITNLTIIAGESVHAAKAIAAT
VCGNIIEVSSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVEPNVHQSMRH
LFGTWKGVFPAQTLQMIEKELGFASTANGSSSGAATSRLDSQSQRPAHSIHVNPKYLERQ
RLQQPTRTKGMASDFSGAMANSIDDAERPDRVASLSAGRPWVDPTVKMHNMQRSNTDALS
ERVHEKNIGAEYGEYEYGSDLPRSSNLGIGRIGGKITEQGNDKPWYGGGSSVAETISSQR
NGFNIKHGLTNYSAPKSANADPRLKIAPAIASRSSGVLSSSWKNSEEEEFKWDDMNSRLT
DHGPPDISSNSRKDCWTSDDSEKLGFGGHFRKPKGANDFATTVDLDTSADPTEHNDLSAL
GHRMSSPWPLPDSHDVDGLTTTGTPVISSVHSERYASSLSGLSTSGDSSVARLGSRAQVA
SSRIGASSFGFGATSGPAVAVGKQKQLQSVRAASPSGQSLVHQHSPAPASTVHHPHHHLQ
SLAEQDYLESPSLPPPDLKVSQLLGKSDLGLHNHYTEDSVPISTPNVRLGSIAKSRPQDL
HSSSSSIKNPSLPQLSTYVTPSTAGISLPDHSNLLAAETSGQSSTSSLLAAVMKTGILSD
KSITGSLPSLNLRDMGQIQSESGVQPPLPSGPPPTQVALPGSKVASAPSSSHLSHENSPA
SSDISLKKVGHPPLPPSQPLSSSLEGTASANASTVVNNASDPISNLLSSLVAKGLISASK
SESPTPVSSQMPNELQNQSVSTPVTSSVSVSLVSASPSLPVSSRTDDVSLAEPLAKTSAA
LPQSSKIETKNPIGIEFKPDKIREFHPSVIEELFDDLPHKCSICGLRLKLKERLERHLEW
HALKTPESNGSVKASRRWYADSTNWVAGKAGPPLGPEDNMSIDKPSETMDNGEPMVPADE
SQCVCVICGYIFEDLYCQERDEWMFKGASYLSIPYGVGDLGTTEESVVKGPIVHANCIAE
NSLSDLGLASRIKLEKDA
NT seq
3297 nt
NT seq
+upstream
nt +downstream
nt
atggaaatggagagctcgcgtaggccgtttaccagatcgactgaaccagtgaagaagccc
cgattggccgacgaccggggcctgaacccgaacccgaacccaaatggtcgagctttcgcg
caaagacccggtggagctaacccagttctgtcaaggttcagagtgaccgatagagactcg
gagagcaatgacgcgagtcgcggtgggggctatgtgccgcagccactgcagcatcaggag
cttgtgagccagtacaagacggcgttggcggagctcaccttcaattcaaagcccataatc
actaatttgacgataattgctggggagagcgtccatgcggcgaaggcgattgcggccact
gtatgcggcaacattattgaggtttctagtgagcagaagttaccatcactttatcttttg
gacagtattgtaaagaatattggaagggattacataaaatattttgctgccagactccct
gaggtgttttgcaaggcatataggcaggttgaacctaatgtacatcaaagcatgcgccat
ctttttggaacatggaagggagtatttcctgctcagacacttcagatgattgagaaagaa
cttgggtttgcttcaacagctaatggttcatcctctggagctgcaacatcaagactagat
tcccagtcgcaacgaccggcacatagcattcatgtgaatcccaaatatttggaaaggcaa
cgtcttcagcaaccaacaaggacaaaaggaatggccagtgacttttctggggctatggca
aactcaattgatgatgcagagaggccggacagagtagcaagtctcagtgctggacgaccg
tgggttgatcctactgttaaaatgcataatatgcagcgttctaatacagatgcactaagt
gagcgtgttcatgagaagaacatcggcgctgaatatggagaatatgaatatggttctgat
cttccaaggagttcaaacttaggaattggaagaattggtgggaagattacagagcaagga
aatgataaaccttggtatggtggtggcagcagtgttgcagaaacaatatccagtcaaaga
aatggttttaacatcaagcatggacttacaaattactcagcacctaaatctgcaaatgct
gatcctcgcctgaagatagcaccggccattgcaagtcgaagcagcggtgtgctgtctagt
agctggaagaattccgaggaagaggagttcaaatgggatgatatgaactcgaggttaaca
gatcatggtccccccgatatttctagtaactcaagaaaagattgctggacttctgatgat
tcagaaaaattggggtttggaggccactttcgtaaaccaaaaggtgcaaatgactttgca
acaacagttgatctggatacgtctgctgatcctactgaacataatgacctatctgctctt
gggcaccggatgtcatcaccttggccattaccggactctcacgatgtggatgggctgacc
actactggcactcctgtgattagttcagttcattcagagcgttatgcttcaagtttaagt
gggctatcaacaagtggagattcttctgtagctaggctgggaagtcgagcacaggtagcg
tcttctcgtattggagcctcaagtttcgggtttggtgcaacatcagggcctgctgtagct
gtggggaaacagaagcagcttcagtctgtgagagccgcatcaccatctggacagtcactg
gtgcaccagcattctcccgcacctgcatcaacagtacatcaccctcatcatcatttgcaa
agtttagctgaacaagactatcttgaatccccgtcccttcctcctcctgatttaaaagta
tctcaacttttgggaaagtcagacttaggattgcataaccactatactgaggactctgtg
cctatctcaactcccaatgtccggctgggtagcatagcaaaatcacggccacaagatttg
cattcttcatcttcgtcaattaagaatccctctttgccacagttgtctacttatgtaact
ccctcaacggctggcatttctttaccagatcattcaaatctccttgctgcagaaacttca
gggcaatcaagcacaagtagtttgttggctgctgttatgaagaccggaattctttctgac
aaatcaattactggtagcctacccagtttgaatcttcgggacatgggacaaattcaatca
gagtcaggtgttcagccccccttgccaagtggacctccccctacccaggttgcactccca
gggtccaaggtcgcatcagcaccttcatcaagtcacctttcccatgagaactcaccagct
tcctcagatatttcactgaagaaggtaggacatccgccacttccacctagccaacccctc
tcttcttctcttgagggtactgcatcagcaaatgcttcaactgtggtgaataatgcctca
gatccaatttcaaaccttctaagctctttagttgcaaagggtttgatatctgcatcaaag
tcggagtcacccactcctgtgtcatcccaaatgccgaatgaactgcaaaaccagagtgta
tctacacctgtcaccagttcagtgtcagtatctctagtttcagcttctccaagtcttcct
gtttcatctcgaactgatgatgtatctctcgccgaacctcttgctaaaacctctgctgcc
ttacctcaatccagcaagatagaaacaaaaaatcccattggcatcgagtttaagccagat
aaaatccgagaattccatccatctgtgatcgaggaactttttgatgacctccctcataaa
tgcagcatatgcggccttaggctcaaacttaaagaacggcttgagagacacttagagtgg
catgctttgaaaactcctgaatccaatggttcagttaaggcatcaaggaggtggtatgca
gattcaaccaattgggttgctggaaaggcaggacctcctttaggacctgaagacaacatg
tcaatagataagcctagcgagacaatggacaatggtgagcccatggttccagccgacgaa
agtcaatgtgtatgtgttatatgtggttatatttttgaagatctttactgtcaagaaagg
gatgaatggatgttcaaaggagcttcatacttgagcattccatatggggttggtgatttg
ggaactacagaggagagtgttgtgaaaggtcccattgttcatgcaaattgtatagcagaa
aattcactctctgatttgggactggccagccgcattaaattggaaaaggatgcctag
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