Prunus dulcis (almond): 117636504
Help
Entry
117636504 CDS
T07328
Name
(RefSeq) endoribonuclease Dicer homolog 3a-like isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
pdul
Prunus dulcis (almond)
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pdul03036
]
117636504
Chromosome and associated proteins [BR:
pdul03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
117636504
microRNA pathway
RISC loading complex
117636504
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
DEAD
Helicase_C
ResIII
PAZ
DND1_DSRM
SNF2-rel_dom
DSRM_DHX29
Motif
Other DBs
NCBI-GeneID:
117636504
NCBI-ProteinID:
XP_034226926
LinkDB
All DBs
Position
8:16787805..16796478
Genome browser
AA seq
1678 aa
AA seq
DB search
MEHSHPEMGITALDHSPEKTQSPPNPNHFIPRSYQVKVFEVAKRKNTIAVLETGAGKTMI
AVMLIKHISKDMIKSNGKRKLIIFLAPTVNLVTQQFKVIKDSTTLEVGNYYGAKGVDEWS
RSCWEMEVQTHDILVMTPQILLDALRNAFLSLEMFCLLIFDESHRATGNHPYTKIMKEFY
HTSGNRPKIFGMTASPVIRKGVSSTMDCENQISALESILDSQVYAIEDRAEIEAYIPSTV
QTCRFYEKTWLLMNLGLKGEMEALWSKYASMLELQREVPSQYQYYQDIDDKIKMLRKRMS
NDYMKILYCLNDLGLICTYEAVKVCLENAFDVEEESQFYRGSSLKLKYFLDEVLHIIEGF
LRPSMQLGNNICTDFEFDYIKAHDLGYISPKLHELLQIFQSFGSGSQVPCLIFVERIITA
NVIERYVKKVPCLSHFTVSYLTGSNKSVGAVAPKLQKETLESFRSGKVNLLFATDVVEEG
IHVPSCSCVIRFDLPKTVRSYVQSRGRCRTSDSQFILMLERGNKKQIDQVFDIIRSEYSM
TETSRNRDPEVCILRNCNFEETKVYYVNATGASVTADSSVSLIHRYCEKLPGDKYFIPKP
TFDFEMSEGLYQCKITLPPNAVFQTTVGPLSSNTHLSKQLVCLEACKMLHEMGALDDHLL
PLIKEPLENDLITKSKESSAGAGTTKRKELHGTTCIRALCGTWGEKLDGEIFEAYKFDYF
CNINETYSGFVLLIESKLDNDVQNIEVDLQLISRMVKSSVSSCGKMHLSAKEVMQAKCFQ
EFFFNGLFGRLFSGSESEGTKREFLLQTETKSLWSSSYMYLLLPIETLDTSNTNPWRVNW
IGISSCANVVEFLKKNYSVGPEHLNGDQGNLSLSMTGSSMTECMASDLIHFANTSIDFHN
LQDLLVLATHTGRIYSIVEVISSESAESPFEETVDAASLEYSYAEYFKTKYGIVLMYPGQ
PLLRLKQSHNPHNLLGAEGAASKDGRSAEIKPQAHVHMPPEVLVSIDFRVDVLRSFYLLP
SLMYRLESLMLASQLREEINGKSGNIKISSSLILEALTTLRCCENFSLERLEFLGDSVLK
YVVSSHLFLKYPEKHEGQLTARRTWAICNASLHKLGTERNIQGYIRDGAFEPRRWAAPGQ
HSRFPDPCKCGVDTLEVPLDSRFQTKAPVKVGKFCDRGHRWMNSKTIADCVEALIGAYYV
GEGLFAALHVMKWLGIDSELEFSLTIEAITRASLRSYIPKNDQIAALESKLGYKFSVKGL
LQEAITHASQQKLGASYCYQRLEFLGDAVLDVLITQHLYHSHTDVDPGELTDLRSAAVSN
ESFARAAVRRNLHPHLQHCSGLLLSHITEYEKLCTEALNNTSLLEEIKGPKALGDMVESI
AGAILIDSKLDLDEVWRVFKPLLSPIATPSSLQLDPLRKLKERCDSLGYFVKETLTKEDA
IVNAELSLQLEDVILVGKGYERKAKAAKQRAARQLLKKFEGYLQRSRDISYVQFDSKRRK
LEREHLDDLSSKDMNIDTCSKLTDDGSSKPIMHTNENMTQMLSSAESRVDSTPANDCSNK
VFGDNIENSGLPVIDSIDTRKGEPRKMLYELCQKLQWRRPEFTPTEDKSRTPIEFGEGSE
KRKGFSSFVSDISLQIPNFGTIVCRGEPRADKNSSFDSAVVAMLYELERRGRLTIGCS
NT seq
5037 nt
NT seq
+upstream
nt +downstream
nt
atggagcactctcatcctgaaatgggcatcactgctcttgatcattcacctgagaaaaca
caatctcctccaaatcccaaccatttcatccccagaagctaccaagtgaaagtgtttgaa
gttgcaaagcgaaagaacacgattgcggtgttggaaaccggtgctgggaagaccatgata
gctgtgatgctaatcaaacacatttctaaagatatgatcaagtccaacggcaaaagaaag
ctgataattttcttggctccaaccgttaatcttgtcactcagcaattcaaggttatcaaa
gattctacaactcttgaagtgggaaattactatggagccaagggagtggatgaatggagt
aggagctgttgggaaatggaagttcaaacacatgatatactggtgatgacaccgcaaatt
ctcttggatgccttgaggaatgcattcttgagcttagaaatgttttgcttattgatcttt
gatgaatcccatcgtgctactggcaatcatccctatacaaaaataatgaaggaattttat
catacatccggcaacaggccaaagatttttggaatgacagcatcccctgttataagaaaa
ggtgtctcatccaccatggactgtgagaatcaaatatcagcactggaaagcatcttggat
tctcaggtttatgctatagaagacagggcagaaattgaagcatatattccctcaacagtc
caaacttgtagattttatgagaaaacatggttactcatgaatttgggtctgaaaggcgag
atggaagctttgtggtctaagtatgcttctatgttagagttgcaaagggaagtgccaagt
cagtaccagtactaccaggacattgatgataaaataaagatgctgagaaagcggatgtcc
aatgactacatgaagattttatattgccttaatgaccttgggctcatatgcacatatgag
gctgttaaagtctgtctagagaatgccttcgatgtcgaagaagagtcccaattttataga
ggaagttctttgaagttgaaatattttctcgatgaagtcttacatataattgaaggattt
cttcgacctagtatgcagctcggcaataacatttgtacagattttgagtttgactatata
aaggcacacgatttgggctacatatctcccaagctacatgaacttttacaaattttccaa
tcatttggaagcggtagccaagttccatgcctcatctttgtagagagaattattacagcc
aatgtaattgaaagatatgttaagaaagtaccatgcttatctcatttcacggtttcatat
ttgaccggaagtaacaaatcagttggtgcagttgcaccaaagttgcaaaaggaaactttg
gaatcatttcgctctgggaaggtcaacctattatttgccactgatgtagttgaggaggga
attcatgtcccaagctgttcctgtgtaatccgtttcgacctgcccaagacagtccgtagt
tatgtccagtcccgaggacgatgtcgaacaagcgattctcagttcatcttaatgcttgaa
aggggcaacaagaaacaaatagatcaagtatttgacatcatcaggagcgagtattcaatg
acagagacgtcaagaaacagagaccctgaagtatgcattttaagaaattgtaattttgag
gaaacaaaagtatattatgtaaatgctactggagcatcagttacagccgattctagtgtc
agtctcatacatcgatactgcgaaaagcttcctggcgataagtactttattccaaagcca
actttcgactttgaaatgtctgaagggttgtaccagtgcaaaataacattacctcctaat
gcagtttttcaaacaacagttggtcctctgagcagcaacactcatttatcaaagcagctc
gtatgcttggaagcttgtaaaatgctccatgaaatgggagccttggatgatcatcttctc
ccacttatcaaagagcctttagaaaatgatctcattacaaaaagcaaagaatcatctgca
ggtgcaggaacaaccaaaaggaaagaactgcatgggacaacttgcattcgtgcgttatgt
ggaacttggggagaaaaacttgatggtgaaatttttgaggcctataaatttgactacttc
tgtaatattaatgagacatactcgggatttgttttactgattgagtcaaagcttgataat
gatgtgcaaaatattgaagtggatcttcaactgatttcaaggatggttaaatcttctgtt
tcttcttgtggaaaaatgcacctgagtgcaaaagaggtaatgcaagctaagtgctttcaa
gaatttttctttaatggcttgtttgggagattgttttcgggatccgaatcagaagggaca
aagagagagtttttacttcagacagaaacaaaatcactatggagctcatcatatatgtat
ttgcttttaccaattgagacattggacacttctaatacgaatccttggagagtgaattgg
ataggaatcagttcttgtgctaatgtggtagagtttttgaagaaaaactattccgtgggt
ccagagcatttgaacggtgatcaaggaaacttatcactttctatgactggttcatccatg
acagagtgcatggcttcagatctaatccactttgctaatacttcaattgattttcataat
ctccaagatttgttagtattggctactcacacgggaagaatctattcaatcgttgaagtc
attagtagcgaatctgctgaaagtccctttgaggaaactgttgatgctgcctcattagaa
tacagctatgctgagtacttcaaaacaaagtatgggattgtccttatgtatcctggacag
ccgctgttacgtttaaagcaaagtcataatccccataacctgcttggtgctgaaggtgct
gcatcaaaagatggtcgttctgctgagataaagccacaagctcatgttcacatgccacct
gaggtcttagttagtattgattttcgagtagatgttctcagatcattttacttgctacca
tcattaatgtaccgtttggagtcactaatgttagctagccagcttagagaggagatcaat
ggcaaatcgggaaacattaaaatatcaagttcattgattctagaagcactcacaacactt
aggtgttgtgaaaatttctcattggaacgtctggagtttcttggagattcagttctcaag
tatgttgtgagctcccacctttttcttaaatatcccgagaaacatgaagggcaattaact
gctcgacgcacatgggctatttgtaatgcaagcctgcataaactaggaacagaacgcaac
atacagggatacatacgagacggtgcatttgaaccacgccgttgggctgctccagggcag
cattctagatttcctgatccatgtaagtgtggagtggatactttagaagtacctttggac
agtagatttcaaactaaagctcctgttaaggttggaaagttctgtgatagaggtcacaga
tggatgaactcaaaaaccatagctgattgtgttgaggccctcattggcgcctactatgtg
ggtgaaggattgtttgctgcacttcatgtgatgaagtggcttggtattgattctgaattg
gaattctcattaaccattgaagccattacgagggcatccctgcgatcctacattccgaaa
aatgatcaaattgctgccttggagtcgaagcttggctacaaattttctgtcaagggtctg
ttacaggaggctataacacatgcctctcagcaaaaactaggtgccagctactgttaccag
aggcttgaatttcttggcgatgcggtgttggatgttctaatcacacagcatctctatcat
agccacacagatgtcgatccaggagagctgactgacttgcgttcagctgctgttagcaat
gaaagctttgctcgagctgctgtaagaagaaaccttcacccacatcttcaacattgctct
gggttacttctgagtcatatcacagagtatgagaagttgtgtacagaagctcttaacaac
accagcttactggaagagataaaaggtccaaaggctcttggtgacatggtggagagcata
gcaggggctatactaattgatagcaagcttgatcttgatgaagtttggagggtttttaaa
ccactattatctccgatcgcgaccccttcaagtcttcaattagaccccctacgtaaattg
aaggaacgatgtgattctcttgggtacttcgtgaaagaaacacttactaaagaggatgca
attgtcaatgcagagctgagtttgcagctggaagatgttattttggttggaaaaggatac
gaacggaaagcgaaagctgcaaaacagagagcagctcgtcaattgttgaagaagtttgag
ggttacttgcagaggagcagagacatatcttatgtccagtttgattctaaaaggagaaaa
cttgaacgtgagcatttggatgatttatcatccaaagacatgaatattgatacctgcagc
aaattaactgatgatggttcttcaaagccaatcatgcatacaaacgaaaacatgactcaa
atgttatcatctgcagagtcaagagttgactctacaccagccaatgactgttccaacaaa
gtcttcggtgacaacattgaaaactcaggcttacctgttattgattcgatcgatacaaga
aaaggtgaacctcgaaaaatgctctacgaactatgccagaaattgcagtggcgaaggcct
gagtttacaccaacagaggataaatcaagaaccccaatagaatttggtgagggctctgaa
aagagaaaaggtttcagcagttttgtttcagacatcagcttgcagatacccaactttggc
actattgtatgcagaggagagcctagagctgataagaatagttcatttgactccgcagta
gttgccatgctttacgagcttgaacgacggggaagacttaccattggatgctcttaa
DBGET
integrated database retrieval system
