Prunus dulcis (almond): 117636612
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Entry
117636612 CDS
T07328
Name
(RefSeq) pre-mRNA-processing factor 39 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
pdul
Prunus dulcis (almond)
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdul03041
]
117636612
Spliceosome [BR:
pdul03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
117636612
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_16
TPR_7
NRDE-2
TPR_12
Motif
Other DBs
NCBI-GeneID:
117636612
NCBI-ProteinID:
XP_034227084
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Position
8:complement(17558693..17566660)
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AA seq
823 aa
AA seq
DB search
MGDSETVVAQTSAVMGYTSAGYTTTGYTDANSNIVPDTGALHSKETTEFSTSAAPADAYS
ADPNSLIQQSDSYTTYETKPSVGVTDAGNENEAMESSHAASYDSSVNGVAASGTGTVSSV
DNGDATDNVAGSVDVQQFGDGSAMSAEEERLWNIVRADSLDFNAWTALIEETEKVAEDNI
LKIQKVYDAFLAEFPLCYGYWKKYADHEARLGSMDKVVEVFERAVQGVTYSVDIWLHYCI
FAISTYGDPDTVRRLFERGLAYVGTDYLSFPLWDKYIEYEYMQQEWGRLAMIYSRILENP
NQQLDRYFNSFKELAGSRPLSELRTAEEAAAAAGAHSEGGDQVNGEEVGSDVAEQSPKPV
SGGLTEAEDLEKYITIREEMYKKAKEFDSKIISFETAIRRPYFHVRPLNVAELENWNNYL
DFIEREGDFNKVVKLYERCLIACANYPEYWIRYVLCMEAVGSLDIANNALARATQVFVKR
KPEIHLFAGRFKEQSGDIPGAQAAYQLVHSEISPGLLEAIVKHANMEHRLGNVEAAYSLY
EQAIAIEKGKEHSQTLPMLFAQYSRFTYLVSLNAEKAREIVVEALEHVQLSKPLLEALIH
FESIQPLPKKIDYLDSLVVKFIEPSSENPNFASVTDREELSSIYLEFINLFGDARSIKKA
EDRHAKLFLPHRSSLSEKKRQAEDFLSSDKVKMAKSYSGVPSPAQSIMGAYPSAQSQWPA
GYGVQPQAWPPATQATQGQQWTPGYTQQPYNAYGGYGSGYANPQMPATTPQTAAYGAYPS
TYPAQQAFPPQSYAQPTVAVAAAATAPAPQPAAVPQAYYGTYY
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atgggggatagtgagacagttgttgctcaaacatctgcagtgatgggatatacatcagca
ggatataccacgacgggctacactgatgccaactcaaatattgttcctgatactggtgcc
ttgcattctaaggagaccacagagttttctacttctgctgctcctgcagatgcatattct
gcggatcccaattctctcattcaacaatcagatagttacacgacatatgagactaaacca
tctgttggagtgacagatgctggtaatgaaaatgaagccatggagtcatctcatgctgct
agttatgattcttctgtgaatggtgttgctgcttccggaacaggaactgtttcatctgtt
gataatggagatgctacagataatgtggccggatctgttgatgttcaacaatttggagat
ggttctgctatgtctgctgaagaagaaagactctggaacattgtgagagctgattccttg
gattttaatgcctggactgctttaattgaagagacagagaaagttgcagaggataacata
ctgaaaattcaaaaagtttatgatgcgtttttagcagagtttcctttgtgttatggttat
tggaaaaagtatgcggatcatgaggcgcgtctaggttctatggataaagttgtggaggtt
tttgaacgagcagttcaaggtgttacctattcagttgacatctggttgcattactgcata
tttgccataagcacatatggagatccagacactgttagaaggctttttgagcgaggatta
gcttatgttggaaccgattacttgtcttttcctctttgggataagtacatagaatatgag
tacatgcagcaggagtggggccgccttgccatgatctattcacgaatattagagaatcca
aatcaacaactggatcggtatttcaacagctttaaggagttagcgggaagtcggccactc
tcagaattgaggactgctgaagaagctgcagctgcagcaggtgcacattcggagggtggt
gaccaagtaaatggtgaagaggttggatctgatgttgcagaacagtctcctaaacctgta
agtggtggcttaacagaggcagaggatttggagaagtatatcaccattagagaagagatg
tataagaaagctaaagagttcgattctaagatcattagttttgaaacagctattaggagg
ccgtactttcatgtgcggcccctcaatgttgcagagcttgaaaattggaacaactaccta
gactttatagaaagggaaggcgactttaacaaggtggtcaagttatatgaaagatgccta
attgcttgcgctaattatcctgaatactggattcgatatgttctttgtatggaagccgtt
ggaagtttggatattgccaataatgctcttgctcgtgcaacccaggtctttgtgaagaga
aaaccagagattcacctttttgctggtcggttcaaagagcagagtggggatatacctggt
gctcaggctgcctatcaacttgtacattctgaaatttcacccgggcttcttgaagcaatc
gttaagcatgcaaacatggaacaccgcttgggaaatgtggaagctgcctactctttatac
gaacaggccattgccattgaaaaaggaaaagagcattcacagacattacccatgttgttt
gctcagtactctcggttcacatacctggtatctttgaatgctgaaaaagctagagaaatt
gtagttgaagcgcttgagcatgtacagttgtcaaaaccactacttgaggctctgatacat
tttgagtcaattcagccactgccaaagaaaattgattatttagattcattggttgtgaag
ttcatagagcccagctcagaaaaccccaatttcgcgagtgttaccgacagagaagagcta
tctagtatctatttggagtttattaatctatttggagatgcacggtctataaagaaggcc
gaggatcgccatgccaagctcttcttacctcataggagcagcctgtcagagaaaaaacgt
caagctgaggactttttatcttccgacaaagtaaagatggcaaagtcttactctggtgtt
ccttcgcctgcccagtctatcatgggagcatacccaagtgcacaaagccagtggccagct
ggttatggtgtacagccgcaagcttggccaccagctacgcaagctacacagggacaacag
tggacccctggttatacccagcagccgtacaatgcatatggtggttatggaagtggctat
gccaatccacaaatgcccgcaacgacgccacaaactgctgcttatggtgcttatccctct
acatatcctgctcagcaggccttccctccacaaagttacgcgcagccaaccgtggcagta
gcagcggcagctacagcaccagctccgcaacctgctgcagtgcctcaggcgtattatggg
acttactactga
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