Prunus dulcis (almond): 117636815
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Entry
117636815 CDS
T07328
Name
(RefSeq) replication factor C subunit 1 isoform X1
KO
K10754
replication factor C subunit 1
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03030
DNA replication
pdul03410
Base excision repair
pdul03420
Nucleotide excision repair
pdul03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117636815
03410 Base excision repair
117636815
03420 Nucleotide excision repair
117636815
03430 Mismatch repair
117636815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdul03032
]
117636815
03400 DNA repair and recombination proteins [BR:
pdul03400
]
117636815
DNA replication proteins [BR:
pdul03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
117636815
DNA repair and recombination proteins [BR:
pdul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
117636815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
RCF1-5-like_lid
PTCB-BRCT
AAA_22
AAA_30
Rad17
Gp44_lid
AAA_19
BRCT_2
AAA_18
nSTAND3
AAA_5
RuvB_N
AAA_16
AAA_24
AAA_14
Sigma54_activ_2
AAA_assoc_2
Zeta_toxin
AAA_28
NTPase_1
AAA_17
RsgA_GTPase
DNAX_ATPase_lid
Motif
Other DBs
NCBI-GeneID:
117636815
NCBI-ProteinID:
XP_034227384
LinkDB
All DBs
Position
8:7712407..7726882
Genome browser
AA seq
964 aa
AA seq
DB search
MSQADIRKWFMKSHDKGNGKKPAPTTSQTPSTAKEEPKEPVHGGQENPGRRKTSKYFTTD
KPKAEKETEVPAKRKTHKEPDESVKPSPAKKVYKVVDDDDDFVLPHSKKNSVDATPSKKL
KSASGVGVPQKLTAIDEGGDDDVKDAESPHKPGGRGRGGRGTSAGPAGGRGRGAGRGGFM
NFGDRKDPPHKGEKEVPEGAPDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRITGSVSK
KTNYLLCDEDIEGRKSSKAKELGTAFLTEDGLFDMIRASIRAKVPVQEAKKSVDDAAAAS
LPKKSPNKVASKKDCAGSSLASSVSHKQLESDASHARRKKQTTEHSASTWTEKYKPKVPN
DIIGNQSLVKQLHDWLAHWHEQFLDTGNKKKGKNPTNSGAKKAVLLSGTPGIGKTTSAKL
VSQMLGFQTIEVNASDSRGKADSKIEKGIGGSNANSIKELVSNKALSMDGLKHPKTVLIM
DEVDGMSAGDRGGVADLIASIKISKIPVICICNDRYSQKLKSLVNYCLLLSFRKPTKQQM
AKRLMQIANAEGLKVNEIALEELAEKVNGDMRMAVNQLQYMSLSMSVIKYDDVRQRLLSS
AKDEDISPFTAVDKLFGFNAGKLRMDERVDLSMSDPDLVPLLIQENYINYRPSSAVKDDS
GIKRMNLIARAAESIGNGDIFNVQIRKYRQWQLSQSACLSSSIFPAALLRGQRETLEQGE
RNFNRFGGWLGKNSTLGKNLRLLEDLHVHLLASRESSSGRETLRVEYLSLLLKRLTVPLR
ELPKDEAVHKVVDFMNTYSISQDDFDTIVELSKFQGHPNPLDGIQPAVKAALTKAYKEGS
KTRMVRAADFVTLPGMKKAPKKRIAAILEPSVDVIGENNDDTLVESEEENSSDTEDLEGS
AAGEKLQQELQSLNTKGVHVQFDLKGATNSSAKKTPTGRGRGGSSAAAEKKGGRGSGAGG
KRKR
NT seq
2895 nt
NT seq
+upstream
nt +downstream
nt
atgtcacaggcagatattaggaagtggtttatgaagtcgcacgacaagggcaatggcaag
aaacctgcgccgactacttcacagactccttctacagctaaggaagagcctaaagaacca
gtgcatggaggtcaagagaatccaggcaggaggaaaactagcaagtattttaccacagat
aagccaaaagctgaaaaagaaactgaagttccagccaaaagaaagactcacaaggagcct
gatgaatccgtgaaaccctcacctgcaaaaaaagtttacaaagttgtcgatgatgacgat
gattttgtcttacctcattcaaagaagaactcagttgatgcgactcctagtaagaaattg
aagagtgcatctggcgtgggagtcccacagaaacttacggctattgatgaaggtggtgat
gatgacgtcaaggatgctgaatctcctcacaagcctggtggtaggggtcgtggcggaaga
ggtacttcggcaggaccagctggtggaagaggcaggggtgctggacgaggtggatttatg
aatttcggagatagaaaagatcctccacacaaaggagaaaaggaagttcctgaaggtgct
ccagattgtttagctggtttaacttttgtaattagtggtacacttgacagtttggaaaga
gaggaagcagaggatttgataaaacgtcatggcggtcgtattactggatctgtcagcaag
aaaacgaactatcttttatgtgatgaagatattgagggaaggaaatcctctaaagccaaa
gaacttggtactgcttttctcaccgaggatggactgtttgatatgattcgggcatctatc
cgtgctaaagtacctgtgcaagaggcaaagaaatctgtggatgatgcggcagcagcatct
ttgcccaagaaaagtcctaataaagtagcatcaaagaaggattgtgctggaagctccttg
gcatcaagtgtatcccacaaacaattggagtcagatgcttcccatgctaggcgtaagaag
caaactactgagcattctgcctctacttggacagaaaaatataagccaaaggttccaaat
gacattatcgggaatcagtcactggtaaagcagcttcatgattggttggcacattggcat
gagcaatttcttgatactggaaataagaaaaaaggcaaaaacccaaccaattctggtgcc
aaaaaggctgtactattaagtggaacgcctggtatagggaaaacgacgtccgctaagtta
gtcagtcagatgcttggtttccagacaattgaggtaaatgctagtgacagtcgtgggaaa
gctgattccaagattgaaaagggaattggtggaagcaacgcaaattctattaaagagctt
gtcagcaacaaggccctgagcatggatggattgaagcatcccaaaactgtgctaattatg
gatgaggttgatgggatgtctgctggagatcggggaggagttgctgatcttattgctagc
ataaagatttctaaaattcctgttatctgcatttgtaatgatcgttacagtcagaaactg
aaaagtcttgtgaactactgtttacttctcagctttcggaaacctactaaacaacagatg
gcaaagaggttgatgcaaattgcaaatgctgaaggacttaaagttaatgagattgctctt
gaggaactcgcagaaaaagttaatggagacatgcgaatggcagttaaccagttgcagtat
atgagcctatcaatgtctgtcattaaatacgatgatgtaaggcagcgcttattaagcagt
gcaaaggatgaagatatttcaccattcacagctgttgacaagctgtttggttttaatgca
ggaaagttgcggatggatgagcgtgttgacctgagcatgagtgatcctgatctagtccct
cttcttatacaggaaaattatattaactataggccaagttcggctgtcaaggatgatagt
gggataaaacgtatgaacttgattgcccgtgccgctgagtctattggcaatggggatatt
ttcaatgtacagattagaaaatatcggcaatggcagctttcccaaagtgcttgtctttca
tcctctatttttcctgctgcattgttgcgtgggcaaagagagacacttgagcagggagaa
aggaattttaatagatttggagggtggctgggaaagaactcaacacttggaaaaaatttg
aggctcttggaagatttgcatgtccatcttcttgcttctcgtgaatctagttcggggagg
gaaaccctgcgagttgaatacctttctcttcttctgaaacgattgactgtgccactccgt
gaacttcctaaggatgaagctgtacacaaagttgtggatttcatgaatacttactccatt
agtcaggatgactttgatactattgtggagttatccaaatttcaggggcacccaaatcct
ctagatgggattcaaccagctgtaaaggcagcgctgacaaaagcttacaaagaaggcagc
aaaacaaggatggtgcgagctgcagattttgtcactttacctggaatgaagaaggctcct
aagaagcggattgctgctattttagaaccatctgttgatgtaattggagagaacaatgat
gatactttggttgagagtgaagaagaaaattcgtcagatacagaggacttggaaggttct
gcggctggtgagaagctgcaacaggaacttcaaagtttaaatacaaaaggagtgcatgta
caattcgatttgaagggtgcaacaaattcaagtgcaaagaagacaccaacgggcaggggt
agaggtggttcatctgccgcagctgagaaaaaaggaggccgaggttcaggggctggtgga
aagagaaagagatga
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