Prunus dulcis (almond): 117637743
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Entry
117637743 CDS
T07328
Name
(RefSeq) zinc finger CCCH domain-containing protein 40-like isoform X1
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117637743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
pdul03041
]
117637743
Spliceosome [BR:
pdul03041
]
Complex B
Other components
Prp19-related factors
117637743
Complex C
117637743
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
zf-CCCH_12
RRM_occluded
zf-CCCH
zf-CCCH_3
RRM_3
zf-CCCH_10
RRM_YTH1
zf-CCCH_4
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
117637743
NCBI-ProteinID:
XP_034228622
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All DBs
Position
8:13585691..13588443
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AA seq
498 aa
AA seq
DB search
MAHRLLRNVEADGWERSDFPIICESCLGDNPYVRMTRADYDKECKICTRPFTVFRWRPGR
DARFKKSEICQTCSKLKNVCQVCLLDLEYGLPVQVRDTALAIGSNDAIPKSDVNREFFAE
EHDRKARAGIDYESSYGKARPSDTILKLQRTTPYYKRNRAHVCSFYIRGECTRGAECPYR
HEMPITGELSQQNIKDRYYGVNDPVAMKLLNKAGEMPSLEPPEDESIRTLYVGGLDERIS
EQDLRDQFYAHGEIESVRMVLQRACAFVTYTTREGAEKAAEELSNKLVIKGLRLKLMWGR
PQAPKQDSEGTAEARQQAVAHSGLLPRAVISQQQNQLQDQPAPVHYYNMPPPPSQERSFY
PSMDPQRMGAIVPSQEGAPSGPTGSGENNSGAERQQRSQHYAFQNMPQPHGQYRQQFYPP
PYGYMPPPTVPYQQYPPQYHAGVPPPPSLPMNQQYQHSATPRPAHSGSTSSGSAPSSSGP
SESTPSGSGSAQTGSSQQ
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacaggttgctcaggaatgtggaggcggatggttgggaacgttcagactttccc
atcatctgcgagtcatgcttgggcgacaatccctacgtccggatgacacgagctgattac
gacaaggagtgcaagatttgcactcggccattcaccgttttcaggtggagacctggtcgt
gatgcgcgatttaagaagtcagagatttgtcagacgtgcagtaagttgaaaaatgtttgt
caagtttgcctcttggatctggaatacggcttgccagttcaggttcgagatactgctctg
gccatcggttccaacgatgccattccaaagagtgatgtaaatagggagtttttcgctgag
gagcatgaccgaaaggctagagctggtatagactacgaatcttcatacggaaaggcacga
cccagtgacactattctgaagcttcaaagaacaacaccctattacaaaaggaacagagca
catgtctgcagtttctacattcggggtgagtgcacaagaggtgctgagtgtccttacagg
cacgagatgcccataactggggagttgtcacagcaaaacatcaaagatcgttactatgga
gtcaatgatccagtggcgatgaagctgcttaacaaggctggagagatgccctccctggaa
cctcctgaggatgaaagcataagaactctttacgtgggtgggcttgatgagagaatttct
gagcaggatttgagggatcaattttatgctcatggtgaaatagaatctgttaggatggta
ctccaacgagcatgtgcttttgtaacctacacaacaagagaaggtgcagaaaaggctgca
gaagaactctctaataaactggtaataaagggtttgagattgaagttaatgtggggtagg
ccccaagcaccaaaacaggactcagagggcacagctgaagctaggcagcaggcagtggct
catagtgggttgttgcctcgagcagtcatatctcaacagcagaaccaattacaagaccaa
cctgcaccagtgcactattacaacatgccacctccaccctcacaggagagatcattttat
ccatcaatggatcctcaaagaatgggggctatagttccatcccaggaaggggctcctagt
gggcctacagggtcgggcgagaacaattccggtgcagaaaggcagcaacgtagtcagcat
tatgcttttcaaaacatgcctcaaccacatggccaatatcgtcagcagttttatcctcct
ccctacgggtatatgcctcctccaacagtaccgtaccagcaataccctccgcaatatcat
gctggagtgccgccgccaccatccttgccaatgaaccaacagtaccagcattcagcaaca
ccaaggcctgcacactcaggttctacatcatcaggatccgcaccatcaagttctggacct
tcagagtccacgccatctggttctgggtctgcacagacggggtcatcccagcagtga
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