Prunus dulcis (almond): 117638743
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Entry
117638743 CDS
T07328
Name
(RefSeq) protein CHROMATIN REMODELING 8
KO
K10841
DNA excision repair protein ERCC-6
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
117638743
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pdul03036
]
117638743
03400 DNA repair and recombination proteins [BR:
pdul03400
]
117638743
Chromosome and associated proteins [BR:
pdul03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
117638743
DNA repair and recombination proteins [BR:
pdul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
117638743
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
WHD_Rad26_CSB
HDA2-3
ResIII
WHD_SOWAH
HAUS-augmin3
Motif
Other DBs
NCBI-GeneID:
117638743
NCBI-ProteinID:
XP_034229739
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All DBs
Position
8:17904134..17910269
Genome browser
AA seq
1218 aa
AA seq
DB search
MEEDEDRILLDSLGVTSANPEDIERDILSGAQNNGNASEVGGSTEEEPLERSESIDPLAA
SQAKLYNKLRAVEFEIDAVASTVEPEQAGNEGAACDGDDDGVEPGDKEDLDQASATGLNL
QHALATDRLRSLKETKAKLEKELSDLDKQRPSKGKQRDKVLSDIVKEKPVPKRKLKQVKK
SGKNLEKRLKTVSFDEDDDFDAVLDAASAGFVETERDELVRKGILTPFHKLNGFERRLQE
LGPSQGRNVPAEEHRSNDFASASVARAVQSISEAAQARPSTKLLDPEALPKLNPPTYPFK
RLKKPLKIPQSLENDTHKNKSSRLRRKRPLPDKRWRKLSNLEEKHVHENEDTPSCEEENQ
EDVGDVDDNEYTYVTLEGGLKIPEHIFNQLFDYQKVGVQWLWELHCQKAGGIIGDEMGLG
KTIQVLSFLGALHFSGMYKPSIVVCPVTLLCQWKREAQKWYPSFHVELLHDSAQDPAGRK
KRSKSNESDSDSDGSLDSDYEKPALSKSTKKWDSLINRVLRSESGLLITTYEQLRIVGES
LLDIDWGYAVLDEGHRIRNPNAEITLVCKQLQTVHRIIMTGAPIQNKLTELWSLFDFVFP
GKLGVLPIFEAEFSVPISVGGYANASPLQVSTAYRCAVVLRDLIMPYLLRRMKADVNAQL
PKKTEHVIFCSLTAEQRSAYRAFLASSDVEQIMDGNRNSLYGIDVMRKICNHPDLLEREH
SGQNPDYGNLERSGKLKVVSQVLKVWKDQGHRVLLFTQTQQMLDIIESFLVSGGYSYRRM
DGLTPIRQRMALIDEFNNSSDVFVFILTTKVGGLGTNLTGANRVIIFDPDWNPSTDMQAR
ERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKNPQQKRFFKARDMKDLF
TLNDEGESGATETANLFGQLSEAANVVGTQNDKHNKQESQKVSVPLANGAGADKGKNSEV
GPSRRNGKEKADHSNDEVDEETNILRCLFDAQGIHSAMNHDMIMNAHDEEKMKLDEQASR
VAQRAAEALRQSRMLRSRDSVSVPTWTGKSGMAGAPSSVRGKFGSTVNSQLINNTKRSDE
VSNNGTNGVAGASAGKALSSAELLARIRGKEEKAVEAGIEHQFGLASGSNRAKSLDVGPS
RSSHNLGGVQPEVLIRQICTFIQQSGGSTSSSSIVQHFKDRIPSKDLPLFKNLLKEIAKL
EKTPNGSVWVLKPEFHQQ
NT seq
3657 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagacgaagacaggattttgttggacagtttgggcgtaacgtcggcaaaccct
gaagatatcgagagagacattttatcaggggcgcagaacaatggcaatgccagtgaagtt
ggagggagtactgaggaggagcctcttgagagatcagaaagtattgatccattggcggcc
agccaggccaaactctataacaaattgagggcagttgagtttgaaattgatgccgttgcc
tccactgttgaacctgaacaagcggggaatgaaggcgctgcttgtgatggtgatgatgat
ggcgtggaacctggggataaggaggaccttgatcaggcttctgctactgggttgaacctt
cagcatgccttagctactgatcgactgagaagtctaaaggaaacaaaggctaaacttgag
aaagagctttcagatttggacaagcaaagaccttccaagggtaaacagcgtgacaaagtc
ttatcagatattgtcaaggaaaagcctgtacccaagaggaagttgaaacaagttaagaaa
tctggaaaaaatctagaaaagaggcttaaaacagtctcatttgacgaggatgatgacttc
gatgctgtgttggatgcagcatctgcaggctttgttgaaacagaaagggatgaattagtt
cgaaaaggaattttaactcctttccataagctcaacggctttgaacgccgccttcaagaa
ctagggccatctcaggggcgtaacgttcctgcagaagaacacaggagtaatgattttgct
tcagccagtgttgctagagcagtgcagtcaatttcagaggctgctcaagctcgcccatcc
accaagctgcttgatccagaagctctaccaaagcttaatccacccacttatccttttaag
aggctaaaaaaacctcttaagattcctcaatccctagaaaatgatacacacaagaataaa
agttcaagattaagaaggaagcgccctttgcctgataaaagatggagaaagctcagtaat
ctcgaggaaaagcatgtgcatgaaaatgaagacactcccagttgcgaagaagaaaaccaa
gaggatgttggagatgtagatgataatgagtatacttatgttaccttggaaggggggctg
aaaatcccagagcacatttttaaccaactttttgactatcaaaaggtaggtgtccagtgg
ctatgggaactgcattgccaaaaagcaggcggaattattggagatgagatgggtcttggt
aaaaccatccaggtcttgtccttccttggtgcattgcatttcagtggcatgtataaacca
agcatagttgtctgcccagttacacttttgtgccaatggaaaagggaggctcaaaaatgg
tacccaagctttcatgtggagttgcttcacgattctgctcaggatcctgccggtaggaaa
aaacgatccaaatctaatgaaagtgattctgatagtgatggttcactggacagtgattat
gagaaaccagcattatccaaaagcactaagaaatgggattccttgattaaccgtgttttg
aggtcagaatctgggttgctaattacaacttatgagcaactccgtattgtaggggaaagt
ttgcttgacattgattggggttatgcagttttggatgaaggacaccgaattcggaaccca
aacgcagaaattactctagtttgtaaacagttacaaacagtacatcgtataataatgacg
ggtgcaccaattcagaacaagctgactgaactgtggtccttgtttgattttgttttccct
ggaaagttgggggtcctgcccatatttgaggctgagttttcagttcccatatctgttggt
ggttatgcgaatgcctcaccattacaagtatccacagcatacaggtgtgctgtggttttg
cgagatttgatcatgccgtatctcctccggcgcatgaaggcagatgtgaatgcccagctt
cctaagaagactgaacatgtcatattttgcagcctcactgctgagcagcgttctgcatat
agagcatttctggctagttctgatgtggaacagattatggatggtaataggaattcgctt
tatggaattgatgtcatgcgtaagatttgcaaccaccctgatctgcttgagagggaacac
tctggccagaatccagattatggtaatctcgaacgcagtggaaaattgaaagttgtttcg
caagtccttaaagtttggaaggatcaaggtcatcgtgttcttctttttacgcaaactcaa
caaatgcttgacattattgaaagttttctggtttctggtggttatagctaccggaggatg
gatggtcttactcccatcagacagagaatggccttaatagatgaatttaacaactcaagt
gatgtgtttgttttcattctgacaactaaggttggtggtttagggacaaatctgacagga
gcaaatagggtgatcatctttgatcctgactggaacccttccactgacatgcaggcaaga
gagcgtgcttggcgtattggtcagaagcgggatgtaactgtatatagattgatcacccgt
ggaaccatagaggagaaggtgtatcatagacagatttacaagcattttctcaccaataag
atattaaaaaacccacagcaaaaaaggttctttaaagctcgagatatgaaggatctcttc
actctgaatgatgagggtgagagtggggcgactgaaacagctaatctgttcggtcagtta
tctgaagctgccaatgttgttggtacacagaatgacaagcacaataagcaagaatctcag
aaagtctctgtaccgcttgccaatggtgctggggctgacaaggggaagaactcagaggtt
ggaccgtccaggaggaatgggaaagaaaaagctgaccacagcaatgatgaagtagatgaa
gaaacaaatattctgaggtgcctatttgacgcccaagggatacatagtgctatgaatcat
gatatgatcatgaatgcgcatgatgaagagaagatgaagcttgatgaacaagcttcccga
gttgcacaaagagcagcagaagcactgcgccagtcacggatgcttcgaagccgtgatagt
gtgtctgtccccacatggactgggaaatcaggaatggctggcgcaccatcatctgtccgt
gggaaatttggttcaactgtgaattcccagttgatcaataataccaaacgctcagatgaa
gtttccaacaatggaacaaatggtgttgcaggggcatctgctgggaaggcattatcttct
gctgaattactggcaagaattagaggaaaggaggaaaaggctgttgaagctggaattgag
catcagtttgggttggcttctggttctaacagagcaaaatctttggatgttggaccttct
aggtcgtctcacaatttaggtggagtgcaacctgaagtactgattcgtcagatctgtaca
tttatccaacaaagcggaggaagtacaagttcttcaagcatagtgcagcattttaaggat
agaataccctcaaaggatcttcccttgtttaagaatcttctgaaggaaatagccaaacta
gagaaaaccccaaacggatcagtttgggttctaaagccagagtttcaccagcagtga
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