Prunus dulcis (almond): 117638867
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Entry
117638867 CDS
T07328
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pdul
Prunus dulcis (almond)
Pathway
pdul03022
Basal transcription factors
pdul03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pdul00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117638867
09124 Replication and repair
03420 Nucleotide excision repair
117638867
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdul03021
]
117638867
03036 Chromosome and associated proteins [BR:
pdul03036
]
117638867
03400 DNA repair and recombination proteins [BR:
pdul03400
]
117638867
Enzymes [BR:
pdul01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117638867
Transcription machinery [BR:
pdul03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
117638867
Chromosome and associated proteins [BR:
pdul03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
117638867
DNA repair and recombination proteins [BR:
pdul03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
117638867
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD_2
HBB
Helicase_C_2
ResIII
DEAD
NAMPT_N
SNF2-rel_dom
AAA_11
AAA_19
DnaB_2
Motif
Other DBs
NCBI-GeneID:
117638867
NCBI-ProteinID:
XP_034229913
LinkDB
All DBs
Position
8:19053906..19058827
Genome browser
AA seq
759 aa
AA seq
DB search
MKFQVEDVTVYFPYDHIYPEQYAYMLELKRALDAKGHCLLEMPTGTGKTIALLSLITSYT
LSKPQNPVKLIYCTRTVHEMEKTLAELKVLHNYQVKHLGPQAQILAVGLSSRKNLCVNPT
VLAAENRDSVDAACRKLTASWVRALAAENPNVPTCEFFEQYEKAGSGAVLPPGVYTLQDL
RAYGKQRGWCPYFLARHMVQFSNVVVYSYQYMLDPKVAGIISKEMQKESVVVFDEAHNID
NVCIEALSVSVRRQTLEGARRNLSKMQHEIERFKATDADRLRKEYNRLVEGLAQGGNLPL
TDTWLQNPALPEDILKEAVPGNIRKADHFVHVLRRLVQYLEGRLETENVEKEGPVGFVAS
ISTHAGIDQKTLKFCYDRLHSLMMTLEITDTDEFLHIQTICDFATLVGTYTRGFSIIIEP
FDERMPHIPDPVLQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFHPVVSRS
FTMSLTRDCICPMVLTRGSDQLPVSTKFDMRSDLGVVRNYGRLLLEMVSVVPDGVVCFFV
SYSYMDGIVNSWNENGILKEIMQHKLVFIETQDVVETTLALDNYRKACDCGRGAVFLSVA
RGKVAEGIDFDRHYGRLVIMFGIPFQYTLSKILLARLEYLRDTFQIKEGDFLTFDALRQA
AQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMALHIAREF
LRKMAQPYDKAGSVSGRKTLLSQEDLEKMGESIADEMLR
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttcaagtagaagacgtcacagtctacttcccatacgaccacatatacccagag
caatatgcatacatgcttgagctcaagcgagccctggacgctaagggccactgcctcctg
gagatgcccacaggcacgggcaagaccattgccctcctctccctcatcacaagttacact
ctctccaagccccaaaacccagtcaagcttatctactgcactcgcactgttcacgagatg
gagaagactctcgctgagctcaaggtcctccacaattaccaagttaagcatctgggtccc
caagcacagatcttggctgtggggctttcgtctcggaagaacctctgtgtcaacccaact
gtcttggccgccgaaaatcgagactctgtcgacgcagcctgccggaaattgactgccagc
tgggtgagagccttggccgctgagaacccaaatgtgcctacttgtgagtttttcgagcag
tatgagaaagctgggtctggagcggttttgcctcccggggtttataccttgcaggatttg
agggcgtatgggaagcagagagggtggtgtccctatttcttggcaaggcatatggtgcag
ttctccaatgtggtggtttacagttatcagtatatgcttgatcctaaagtggctgggatt
atttccaaggaaatgcagaaggagtctgttgtggtgtttgatgaggcccacaatattgat
aatgtgtgtattgaagcgcttagtgttagtgtgaggaggcagacacttgaaggggccaga
aggaatctcagtaagatgcagcatgaaattgaaaggttcaaggccactgatgcggataga
ttgcgtaaagaatacaaccgacttgttgagggtttggcacaaggaggaaacctacctctc
acagatacttggcttcaaaatcccgctctacctgaagatattctgaaggaggctgtgcct
ggaaatattcgcaaagcagaccattttgtgcatgtgttacgaagattggtccagtatttg
gaagggcgtcttgagactgagaatgttgagaaggaaggccctgttggttttgttgcctct
attagtacacatgctggaattgaccagaaaactctgaagttctgttatgatcgcctacac
tcactcatgatgacgttggaaattactgacacagatgagttcttacacatccaaacaatc
tgtgacttcgcgacacttgtggggacgtacactcgcggtttctctattataattgaacca
tttgatgagagaatgccacatattcctgatcctgttttgcagcttagctgtcatgatgca
tctcttgccataaaacctgtatttgatcgatttcaatcagttgtgattacatctggaacc
ttgagcccgattgatctctacccccgtcttctcaatttccatcctgtcgtcagtcgaagt
tttacaatgtcattaacaagagattgcatctgcccaatggttctcacgcgtggaagtgat
cagcttccggtaagtaccaaatttgatatgagaagtgatcttggcgtagtaaggaactac
gggaggctgctgctggagatggtttctgttgtcccagatggggttgtatgtttctttgtc
agttactcttatatggatggaatagtcaatagctggaacgaaaatggaattttaaaggaa
ataatgcagcataagcttgttttcattgagacccaagatgtcgttgaaactactttggct
cttgacaattaccggaaggcttgtgattgtgggagaggtgctgtctttttgtctgttgcc
aggggaaaagtagctgaagggatagactttgatcgacattatggacgattggtgatcatg
tttggtattccttttcagtacacattaagcaagattttgctggcgcggctggaatacttg
cgggatacctttcaaataaaggaaggagattttttgacttttgatgccttgagacaagct
gctcaatgtgtaggccgagtcatccggtcaaaagcagactatggcatgatgatatttgct
gacaaaagatatagccgtcatgacaagagatccaaattgccagggtggatactgtcacat
ttacgtgatgcacacctaaatttgagcacagacatggctctgcatatagcacgggagttc
cttaggaagatggctcaaccatatgataaggctggtagcgtaagtggtaggaaaaccctt
ttgtcccaagaagatttggaaaagatgggcgaaagcattgctgatgaaatgttgcgttaa
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