Pseudoalteromonas distincta: FFU37_02420
Help
Entry
FFU37_02420 CDS
T08139
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pdv
Pseudoalteromonas distincta
Pathway
pdv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FFU37_02420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdv03019
]
FFU37_02420
Enzymes [BR:
pdv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FFU37_02420
Messenger RNA biogenesis [BR:
pdv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FFU37_02420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
Cas3-like_C_2
DUF7394
Motif
Other DBs
NCBI-ProteinID:
QCU73387
UniProt:
A0A4P9IYA7
LinkDB
All DBs
Position
L1:541658..542905
Genome browser
AA seq
415 aa
AA seq
DB search
MSATTFSSLNLDPLLLTAIEQNNYTQPTAIQIKTIPPILAGSDVMGSAQTGTGKTAAFVL
PILHKLLNTPKKDEQGLARVVILTPTRELAQQVFASFEKYAQGTNINGALAYGGASIGPQ
IKALKTAQVIVATPGRLLDHIVKGSVVLSSVDSLVFDEADRMLDMGFIDEIRRILRHIPG
DRQTLLFSATFDDSVFELSKKLLKNPELIEVDKRNSAAVEVEQVIYAVDEDRKRELVSHM
IGMKNWRQVLIFTRTKQMADQLAKEMCKDGLKTESIHGDKSQGARDRALQNFKEGITRVL
VATDVAARGLDISTLRYVINFELPYIAEDYVHRIGRTGRAGEQGLAMSLVSLDEQWLLEE
IEVLLDTRLTPQWLEGYEPDLNKKPKDNRKNTNKSRKDRDKKRITGKREPSRRRK
NT seq
1248 nt
NT seq
+upstream
nt +downstream
nt
atgtctgccactacgttctcatcacttaatctcgacccgttattattaacagcgattgag
caaaataattacactcagcctaccgcaattcagattaaaactattccgcctattttagcc
ggaagtgatgtaatgggcagcgcgcaaacaggtacgggtaaaaccgccgcctttgtttta
cctatattacataagcttttgaatacccctaaaaaagatgagcaaggccttgcccgcgtt
gtaattttaacgccaacacgagagcttgctcagcaagtatttgccagctttgaaaagtac
gcacaaggcactaacatcaatggtgctttagcctatggtggtgcaagtattggccctcaa
ataaaagcacttaaaacagcacaagttatagtggccacaccagggcgtttgcttgatcat
atagttaaaggcagtgtggtactttcaagcgtagactctttagtgtttgacgaagccgac
cgcatgcttgatatgggctttattgatgaaattagacgtatattgcgacatataccgggc
gatcgccaaactttactcttttcagctacgtttgatgacagcgtgtttgaactcagtaaa
aaactacttaaaaacccagagctaattgaagttgataaacgtaactcagctgcggttgaa
gtagagcaagttatttacgctgtagatgaagaccgtaagcgcgaacttgtatcgcatatg
attggcatgaaaaactggcgccaagtgcttatttttacgcgcacaaaacaaatggccgat
cagctcgctaaagaaatgtgtaaagacggtttaaaaaccgaatcaatccatggcgataaa
tcgcaaggcgcacgtgaccgtgcactgcaaaactttaaagaaggtattacacgcgtactt
gttgcaaccgatgtcgctgcgcgtggtttagatatttctacacttagatacgtaattaat
tttgaactgccgtacattgccgaggattatgtgcaccgtattggccgtacaggtcgcgct
ggtgaacaagggcttgctatgtcattggtaagtcttgatgagcaatggctgctagaagaa
attgaagtattactcgatacgcgtttaacgccgcagtggttagaaggttacgagcctgac
ttaaataaaaagcccaaagataatcgtaaaaatacgaataaatcgcgaaaagatcgcgat
aaaaaacgcattacaggtaaaagagagccaagtagacgtcgtaaataa
DBGET
integrated database retrieval system
