Pseudoalteromonas distincta: FFU37_05080
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Entry
FFU37_05080 CDS
T08139
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pdv
Pseudoalteromonas distincta
Pathway
pdv03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
FFU37_05080 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdv03400
]
FFU37_05080 (recB)
Enzymes [BR:
pdv01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
FFU37_05080 (recB)
DNA repair and recombination proteins [BR:
pdv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FFU37_05080 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_25
AAA_11
NTase_sub_bind
Motif
Other DBs
NCBI-ProteinID:
QCU73864
UniProt:
A0A4P9IZY5
LinkDB
All DBs
Position
L1:1137449..1141027
Genome browser
AA seq
1192 aa
AA seq
DB search
MQALNPLTMPLTGQSLIEASAGTGKTYTITGLYLRYLLGMQIEGELNTPLSVEQILVVTF
TDAATQEIKDRVRSRIIAARDALLGQDPNDELIEGVIAKIDDKHRAFDLLDAAAKSMDEA
AIFTIHGFCQRMLKQHAFESGVAFNLEFILDERDILLETIKDFWRAFVYPLNKERTDAIL
DVFAAPEALFAQVASILNKANAHITPQINLDDVWKARDEYITRVPAFKKAVLEQEFIGAI
KSSGLSGSKTPARKGSLGALEAFCLGGDLFFEFGTSKYSFEVWSTENLSDVSNYKKNQPL
FVHPLLCQFDELAALNNTINQGLKIAVVQHAARWVKAAIVKRKQEQSVITPDDLLTNLHS
ALNNEQGDVLAQKIAQLFPVAMIDEFQDTDPIQYGIFSKIYGQQNTTLAMIGDPKQAIYG
FRGADIFTYIGAKGAVQSDQQFTLGTNFRSSTDIVNSVNSLFGKHANSFIYNDAIPFNAV
AAKGKKAEDSFLIDGKPATAFEFNVFVDEAADEKNKPTNKGVGQAHLATHFANKIVTLLE
KAKQGDACIGSTPVSAADICILVRDRVEAQIMKKALDDAKIASVYLSRESVFSQELSHHL
LNFLTALHGQYDESLLRGVLAGPLFCLSYNEIHALADDENKWQDYLNFFAQLSHIWNKQG
AMAMLERLMSHNQLSAKWQGLGYNVERWLTDFRHLGEILQQKQIELEGTLRLLRWFAQKV
SQQDGETVQVRLESDANLVKIVTMHASKGLEYPLVFMPFASGYRETKEALYHNNGKLVYD
LSKDENALQKAEQERLAEDLRLLYVALTRAVHFCALGVYNIGQGQSSRLAMQSSALGHVL
FAGLELASSQTWRTHLSEFCDANSAMSYQQFTSQTLLEQGTLCFNNSESAQQTLSVNKVT
ANIERHWRATSFSALSFKKHSDQLAPGRSDEDHEKDEFAVQEDELPSPYSFPKGAKPGSC
LHEIFEQIDFTSPIVHPTNTEQNLSEVVKRSLEKYHIGEQWREVAEKWVLDVLACPLDNS
SLDNSLLSLGVLTPKDCLVEMEFNLPLESLSAPKLNEMLIKHFGFTQSKLEFSHVKGLLK
GFVDLIFCYQGKYYILDYKSNYLGSMPADYEGDMLEQAMSSHQYHLQYLIYTVALHRLLK
QRIADYSIETHLGGVYYTFLRGMPAGQGVYFKKLTEEQVIILDGLFSQGAML
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atgcaagcgcttaatcctcttactatgccgctcactggtcaaagtttaatagaagccagt
gcgggtactggtaaaacttataccattacagggctgtatttacgttacttactaggtatg
caaatagaaggtgagttaaatacgccgctcagtgttgagcaaattttggttgtaaccttt
accgacgccgccacccaagaaattaaagaccgcgtacgcagccgaattattgctgcacgc
gacgcactgcttgggcaagacccaaatgacgaactcattgaaggcgtaattgccaaaatt
gatgataagcaccgcgcgtttgatttgctcgatgcagctgctaaatcaatggacgaagcc
gctatttttactattcatggcttttgtcagcggatgctaaagcaacatgcgtttgagtcg
ggtgtggcgtttaatctcgaatttattttagatgagcgcgacatattactcgaaactatt
aaagatttttggcgggcatttgtatacccacttaataaagaacgcaccgatgctatttta
gatgtatttgccgcaccagaggctttattcgctcaagtggcgagcattttaaacaaagct
aatgcgcacattacaccacaaataaatttagatgatgtatggaaagcccgtgacgagtac
ataacccgtgtgcctgcatttaaaaaagcggtgttagagcaagagtttatcggtgctatt
aaaagctcgggtttaagcgggtctaaaacgccagcacgaaaaggcagccttggtgcgctt
gaagcattttgtttaggcggcgatttgttttttgaatttggcactagcaagtattcgttt
gaagtgtggagtacagaaaacttaagcgatgtgagcaattataaaaaaaatcagccatta
tttgtgcatccattactgtgtcagtttgacgagcttgccgcccttaacaacaccataaac
caagggctcaaaatagccgttgtacaacatgcagcacgctgggtaaaagccgcaatagtt
aagcgcaagcaagagcaaagcgttatcaccccagatgacttattgaccaatttacatagt
gcgcttaataacgagcaaggcgacgtactagcgcaaaaaattgcgcagttgtttccggtt
gccatgattgatgaattccaagataccgatccgattcagtacggtatttttagtaaaatt
tatgggcaacaaaataccacgcttgccatgataggcgaccctaaacaagctatttatggc
tttaggggcgcagatatttttacgtatattggcgcaaaaggggctgtacaaagtgatcag
caatttacgctgggtactaactttcgctcaagcacagatatagtcaatagcgttaatagt
ttatttggcaaacacgctaacagctttatttataacgacgccatcccctttaacgcagta
gctgctaaaggtaaaaaagcggaagactcttttttaattgatggcaaacccgcgaccgca
ttcgaatttaatgtatttgtggatgaagccgcagacgaaaaaaacaaaccaaccaacaaa
ggtgtagggcaagcacatttagccactcactttgctaataaaatagtgaccctgcttgaa
aaagcaaaacaaggggatgcgtgtattggcagtacccctgtaagcgctgccgatatttgt
atattagtgcgcgaccgtgttgaagcacaaataatgaaaaaagcgctagatgatgccaaa
attgccagcgtgtatttatcgcgcgagagcgtttttagccaagagcttagccatcaccta
cttaactttttaacagcgctgcatggtcaatatgacgagtcattgctgcgcggtgtttta
gcgggtccactattttgtttaagttataacgaaatacacgcactcgccgatgatgaaaat
aaatggcaagactacttaaacttttttgcacaacttagccacatttggaacaagcaaggc
gctatggcaatgcttgagcgtttaatgagccacaatcagctgagcgctaaatggcaagga
ttgggatataacgttgagcgttggctgacggactttaggcatttgggcgaaatacttcag
caaaaacaaatagagcttgaaggcacgctgcgtttgctgcgatggtttgcacaaaaggta
agccaacaagacggtgaaacagtacaggtacgcctagaaagtgacgccaacttagttaaa
attgtcactatgcatgcctcaaaggggcttgaatacccactggtatttatgccgtttgcc
agtggctatcgcgaaacaaaagaagcgctttatcataataatggcaagctagtttacgat
ttaagtaaagacgaaaatgccctgcaaaaagcagaacaagaacgcctagctgaagattta
cgcctgctttatgtagcacttactcgcgccgtacatttttgtgcgcttggtgtttataac
attgggcaaggacaaagtagccgcttggctatgcaaagtagtgcacttgggcatgtttta
tttgcagggcttgaacttgccagtagccaaacatggcgcacgcatttaagtgagttttgc
gacgctaacagcgcgatgagctatcagcagtttacatcacaaacattattagagcaggga
acactttgttttaataacagtgaaagtgcgcagcaaacgttaagtgttaataaagtaacg
gcaaatattgagcgtcactggcgagcaaccagctttagtgcattgagctttaaaaagcac
agcgaccaattagccccagggcgaagtgatgaagatcacgaaaaagacgagtttgcagtg
caagaggacgaactaccatcaccttatagttttcctaaaggggcaaagcccggtagctgt
ttacacgaaatatttgaacaaatagattttactagcccaatagttcacccaactaatact
gagcaaaacttatctgaagtagttaagcgcagccttgaaaaataccacataggtgagcaa
tggcgagaagtggctgaaaaatgggtgcttgatgtgcttgcgtgccccctagataacagc
tctttagataacagccttctttcattgggtgtgctcacacccaaagattgcctagtcgaa
atggaatttaatttaccacttgagagcttaagtgcaccaaagctaaacgaaatgctaatt
aaacattttggctttacgcaaagtaagcttgaattttcgcacgtaaagggcttgttaaaa
ggctttgtcgatttaatattttgctaccaaggcaaatattatattttagattataagtct
aattatttaggcagtatgccagctgattacgaaggcgatatgcttgagcaagcgatgagc
agtcatcagtatcatttacagtatttaatttacaccgtagcactgcatcgtttattaaaa
caacgcatagctgattactcaatagaaacccatttaggcggcgtgtattacacgttttta
cgaggaatgccggcagggcaaggcgtgtactttaaaaagctaactgaagaacaagtgatt
attttagatggcttatttagccaaggagccatgctatga
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integrated database retrieval system
