Pseudoalteromonas distincta: FFU37_10205
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Entry
FFU37_10205 CDS
T08139
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pdv
Pseudoalteromonas distincta
Pathway
pdv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FFU37_10205
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdv03019
]
FFU37_10205
03009 Ribosome biogenesis [BR:
pdv03009
]
FFU37_10205
Enzymes [BR:
pdv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FFU37_10205
Messenger RNA biogenesis [BR:
pdv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FFU37_10205
Ribosome biogenesis [BR:
pdv03009
]
Prokaryotic type
rRNA helicases
FFU37_10205
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
P-loop_SecA
CMS1
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QCU74793
UniProt:
A0A4P9J1Z8
LinkDB
All DBs
Position
L1:2288235..2290079
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AA seq
614 aa
AA seq
DB search
MSEPVTFESLNLSPAILKAVEELGYKTPSEIQAQCIPLLLERKDVLGLAQTGTGKTAAFA
LPLLNNIDPSVKQPQILVLTPTRELAIQVAEAFEQYAKHVRGIEVLALYGGQSYSIQLSA
LRRGAQVIVATPGRLIDHINRGTIKFDALQALVLDEADEMLRMGFIDDVESIMEKTPREK
QTCLFSATMPKQIQNISSKYMNNPEQVHISARNSTVSSVEQVFWNASVHKNKAIVRFLEA
EQYEGAIVFVRTRNDTVQLAELLEREGFSAAPLNGDMNQQARERTVDRLKSGMLNIVIAT
DVAARGLDVDRLSLVINYDIPQDSEAYVHRIGRTGRAGRTGKAILFVKHNERYLLKNIIR
HTKSEIAQVELPTAKIVEEKRIEALQAKLTIALENKDITFFNEVATNMAEKLDLPLESLA
GALLCLAQQQSPIKVEEVKIQPRERNERNDRNSRNDRGDRGRRNERGGERGGERAERKPR
ERNSRDAGPMDTYRIEVGREHGVQVKNIVGAIANEADISSKFIGDIRLHDNHSTVQLPQN
MPKDVLDHFQKVFICKRPMGLTITTDQGPAEPRGERSERPAGDKKRSFNKDDGARGDKRS
GPRKERRPVSFTAK
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaaccagtcacgtttgaatctctaaatctttctcctgcaattttgaaggcagtt
gaagagttgggttacaagacaccatctgaaatccaagctcaatgtataccgttattgcta
gaaagaaaggacgtactgggactagctcaaacgggtacaggtaaaaccgcagcatttgca
ctgccattactaaataatattgacccgtctgtgaaacagccacagatccttgtactcaca
ccaacacgtgagcttgcgatccaagttgctgaggcattcgaacaatatgctaaacatgtt
cgtggtattgaagtattggcactctatggtggccaaagctacagtatccaattaagcgca
cttcgtcgtggcgctcaggttattgttgcaactccaggtcgtttaatcgatcacattaac
cgtggcactatcaagtttgatgctctacaagcacttgtacttgatgaagccgatgaaatg
ttacgtatgggctttatcgatgatgtagaaagcatcatggaaaaaacaccgcgcgaaaag
caaacatgtcttttctctgcgactatgcctaagcaaattcaaaacatcagcagcaagtat
atgaacaatcctgaacaggttcatatttctgcgcgtaactcgacagtatcatctgttgag
caagtgttttggaatgcaagcgtacataaaaataaagcaattgttcgcttcttagaagct
gagcaatatgaaggtgctattgttttcgtacgtacgcgtaacgatacagtacaacttgct
gagttattagagcgcgaaggtttctctgctgctccacttaacggtgacatgaaccagcaa
gcacgtgaacgcactgtagatcgcttaaaaagtggcatgctaaacattgttattgcaaca
gatgtagcggcacgtggtctagatgttgaccgtttaagcttagttatcaactacgatatc
ccacaagattctgaagcctacgttcaccgtatcggccgtacaggtcgtgctggtcgtact
ggtaaagcaatcttattcgtaaaacataacgaacgttatttacttaaaaatatcattcgt
catacgaagtctgaaattgctcaagttgaattacctacagcaaaaattgttgaagaaaaa
cgtatcgaagcgttacaagcaaaattaactattgcgcttgaaaacaaagacatcacgttc
ttcaatgaagtagctactaacatggctgaaaaacttgaccttcctcttgaaagcttagcg
ggtgcgttactgtgtttagcacagcaacagtcgccaattaaagttgaagaagttaagatt
caacctcgtgaacgtaacgagcgtaacgaccgcaattcacgcaacgatcgtggtgaccgt
ggacgtcgtaacgaacgtggcggcgaacgtggtggagagcgcgctgagcgtaaacctcgc
gaacgtaacagccgtgatgcaggtcctatggatacgtaccgtatcgaagtaggtcgtgaa
catggtgttcaggttaaaaatattgttggcgctatcgctaacgaagctgacatctcaagc
aagtttattggtgatattcgtctacacgacaatcacagcacggttcaattaccgcaaaac
atgcctaaagatgtacttgatcacttccaaaaagtgtttatttgtaaacgccctatgggc
ttaacaattacaactgatcaaggtcctgctgaaccacgtggcgaacgctctgagcgtcca
gctggtgataagaaacgcagctttaataaagatgacggcgcacgcggtgataagcgcagc
ggtcctcgtaaagaacgtcgccctgtaagcttcacagctaaataa
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