Pseudoalteromonas distincta: FFU37_13565
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Entry
FFU37_13565 CDS
T08139
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pdv
Pseudoalteromonas distincta
Pathway
pdv02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pdv00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FFU37_13565 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdv03021
]
FFU37_13565 (rpoD)
Transcription machinery [BR:
pdv03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FFU37_13565 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
SQS_PSY
Motif
Other DBs
NCBI-ProteinID:
QCU75423
UniProt:
F3BDY4
LinkDB
All DBs
Position
L1:3036660..3038510
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AA seq
616 aa
AA seq
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MDPTPQSQLKLLIQKGKEQGYLTFAEVNDHLPQDIIDSDQVEDIISMINDMGIKVSENAP
DADELMMQETTTDEDAAEAAAAALATVEKEIGRTTDPVRMYMREMGTVELLTREGEIVIA
KRIEEGINQVQISVAEYPEAITYLLEQWDKFEAEEMRLSDIIVGFIDPNEDTAPISATNI
GSELSAKQLEDDDKDDKDDADSDDEDEEEIDTGPDPEEARIHFENLRDLYNKARDTFEAK
GRSHPESQAAIFEIGELFRTFKLIPKQFDRMVNNMREMMDRVRVQERLIMKQAVQIAKLP
KKTFVKHFANNETDASWVDLEISGNEKYSAKLEEVKPEIIRSINKLSVIEQTTGLSIERI
KDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDK
FEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREP
NPEELAERMMMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTIDSPIDSATME
SLRGATNDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKL
RHPSRSDLLKSFLDAK
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atggatccaactcctcagtcacaattaaaacttctgattcagaaaggtaaagagcaaggc
tacttaacttttgcagaagtaaatgatcaccttccacaagacattatagactcagatcaa
gtagaagatatcataagcatgattaatgacatgggtatcaaggttagcgaaaacgcgcct
gatgctgatgaattaatgatgcaagaaacaacgacagacgaagacgcagctgaagctgcc
gctgcagcccttgcgactgtagaaaaagaaatcggccgtacaacggatcctgttcgcatg
tacatgcgcgaaatgggtactgttgaacttcttacacgtgaaggcgaaattgtaatcgct
aaacgtattgaagaaggcattaatcaagtacagatttctgttgcagagtaccctgaagca
atcacttacctactagagcagtgggataagtttgaagctgaagaaatgcgtttaagcgat
attatcgttggctttatcgatcctaatgaagatacagcgccaatttcagcaactaacatc
ggttcagaattaagtgctaagcaacttgaggacgacgataaagatgacaaagatgatgct
gatagcgatgatgaagatgaagaagagatagacacagggccagatcctgaagaagctcgt
attcattttgaaaatttacgtgatttatataataaagcacgtgatacgtttgaagctaaa
ggtcgttcgcatcctgaatcacaagcagccatttttgaaattggtgagcttttcagaaca
tttaaattaatacctaaacagtttgaccgcatggtaaataacatgcgtgaaatgatggat
cgagttcgtgttcaagaacgcctaatcatgaagcaagctgttcaaattgctaaattacca
aagaaaacattcgttaagcattttgctaataacgaaactgacgcttcttgggttgattta
gaaatttcaggtaacgaaaagtattcagctaaacttgaagaagttaagccagaaatcatt
cgtagcattaataaattatctgttattgaacaaacaacaggtttaagcattgagcgtatt
aaagacatcaaccgtcgaatgagcataggtgaagcgaaagcacgccgtgcgaaaaaagaa
atggttgaagctaacttacgtcttgtaatctcaattgctaaaaaatacacaaaccgtggc
ttacaattcttagatttgatccaagaaggtaacattggtctgatgaaagcggttgataag
tttgaatatcgccgtggttataagttctctacttatgctacgtggtggatacgtcaagca
atcacacgctctattgctgaccaagcaagaacaatccgtatccctgtacatatgattgaa
acgattaataaacttaaccgtatctctcgtcaaatgttacaagaaatgggtcgtgagcca
aatccagaagaattagcagaacgcatgatgatgcctgaggataaaatccgtaaggtactt
aagattgctaaagagccgatttcaatggaaacaccaatcggtgatgatgaagattctcac
ttaggtgactttatcgaagatacaactattgattcgccaatcgattcggcaacaatggaa
tctcttcgtggcgcaactaacgatgtacttgcaggcttaacagctcgtgaagctaaagta
ctacgtatgcgttttggtattgatatgaataccgaccacaccttagaagaagtaggtaaa
cagtttgacgtaacacgtgaacgtattcgtcaaatagaagcgaaagcgctgcgtaaatta
cgccacccttctcgctcagatttactgaaaagctttttagacgctaaataa
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