Pseudoalteromonas distincta: FFU37_20020
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Entry
FFU37_20020 CDS
T08139
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pdv
Pseudoalteromonas distincta
Pathway
pdv03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdv00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FFU37_20020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdv03019
]
FFU37_20020
Enzymes [BR:
pdv01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FFU37_20020
Messenger RNA biogenesis [BR:
pdv03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FFU37_20020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
P-loop_SecA
Cas3-like_C_2
AAA_19
Flavi_DEAD
AAA_22
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
QCU76737
UniProt:
F3BG61
LinkDB
All DBs
Position
S1:740538..741842
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AA seq
434 aa
AA seq
DB search
MNFKSFSFAPEIIQALDELNYHTLTPIQRAAIPAVRKGKDVLASAQTGTGKTAAFALPII
QKLVESELSTTNAPHALVLAPTRELAEQIANNFRDFAKHTSLKVVSLFGGVSTAGQANAL
KEGVDIVVATPGRLFDHIRLGNLSLASVKHLVLDEADRMLDMGFIEDMQNVIKSCAEERQ
ILLFSATFPAAIKQFASKVLKQAEIVRVDQTNSTASTVEHVVYPVEERRKQELLSELIGK
KNWQQVLVFVNMKETADELVKELNLDGIPAGVCHGDKSQGNRRRALREFKEGKVRVLVAT
EVAARGIDIDGLPRVINIDLPWLAEDYVHRIGRTGRAGRQGQAISFVSREEENTLFEIET
LIGQKIKRVYLEGYEVSNREVLIDKIGKKPAHLRRTRSNKLSGQATGEARAVNRSRISSV
RKSLKGEKLSLKKS
NT seq
1305 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaaatcttttagtttcgctcctgaaatcatccaggcgttggacgaacttaac
tatcacactcttacgcccattcagcgcgcagcaatccctgctgttcgtaaaggtaaagac
gttttagccagtgcacaaactggtaccggcaaaactgccgcgtttgctttacctatcatc
caaaaattggttgagtctgaactcagcacaacgaatgcacctcatgcgttagtacttgct
ccaacgcgtgaacttgcagaacaaattgcaaataattttagagattttgcaaagcataca
tcacttaaagtcgttagtttattcggtggtgttagtaccgccggccaagcaaatgcttta
aaagaaggtgtagatattgttgttgcaacaccaggtcgtttatttgatcatattcgctta
ggtaacttaagccttgcaagtgttaagcaccttgttcttgatgaagccgaccgtatgctt
gatatgggctttattgaagacatgcaaaacgtgattaaaagctgtgcagaagagcgccag
attttacttttctcagctactttccctgcagcaattaaacaatttgcatctaaagtatta
aaacaagctgaaatagtgcgtgttgatcaaactaacagtacagcaagtactgttgagcat
gttgtttaccctgttgaagaacgtcgtaagcaagaactactttctgaattgattggtaag
aaaaactggcaacaagtgcttgtcttcgtaaacatgaaagaaacagctgatgagcttgtt
aaagagcttaaccttgatggtattccggcaggcgtttgccacggtgacaaatctcaaggt
aaccgtcgtcgtgcacttcgtgaatttaaagaaggcaaagtacgtgtattagtagctaca
gaagtggctgctcgcggtattgatattgatggtttacctcgtgtaattaatattgattta
ccttggcttgcagaagattacgttcaccgtattggccgtacaggtcgtgctggtcgccaa
ggtcaagcaatctcatttgttagccgcgaagaagaaaacactttgtttgaaattgaaacg
ttaatcggtcaaaaaatcaaacgtgtatatttagaaggttacgaagtaagtaaccgtgaa
gtactcattgataaaattggtaaaaaaccagcgcatttacgccgtacacgttctaacaag
ttatcaggacaagcaaccggtgaagcgagagcagtaaatcgctcacgtatttcaagcgtt
cgtaaaagcttaaaaggcgaaaaactgtcacttaaaaagtcatag
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