Pseudomonas donghuensis: BV82_0002
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Entry
BV82_0002 CDS
T07361
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pdw
Pseudomonas donghuensis
Pathway
pdw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
BV82_0002 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pdw03400
]
BV82_0002 (recB)
Enzymes [BR:
pdw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
BV82_0002 (recB)
DNA repair and recombination proteins [BR:
pdw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
BV82_0002 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_22
AAA_30
AAA_25
AAA_11
AAA_12
Motif
Other DBs
NCBI-ProteinID:
KDO01869
UniProt:
A0AAP0XCV0
LinkDB
All DBs
Position
867802..871491
Genome browser
AA seq
1229 aa
AA seq
DB search
MSLAVAPAPLALTFPLHGSQLIEASAGTGKTFTISALYLRLVLGHGGEQGFGRELLPPQI
LVVTFTDAATKELRERIRTRLAEAARYFRGELSEADPLLQQLRDDYQPSLRAACANRLDV
AAQWMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGQVMRDYWRRFCYSMQ
GDALAWVRSHWVSPETLLPRVRALFGRQHIDSNEEEPQALIDAVLEQRAELLRTLKAPWA
QWSGELLQICREGLAAKQVDGRKMQARYFEPWCEKLKAWAEDDQALELDLGTGFSRFTRA
GMAEAWKGEAPSHPALQAMEGLRDQLQGLPTPDACLLEHAAAWVGARFEQEKRRRAEMGF
DDMLLRLDHALHGDAGERLAGLIREQFPVALIDEFQDTDPVQYRIFQRIYRIEENVRDTG
LFLIGDPKQAIYAFRGADIFTYLGARRATAGRLHSLDTNYRSSQAMVTAVNHVFMQAEVR
EQGRGAFLFRDGSDNPVPFLEVKAKGRSEQLQVDGSPVPALNLWQLSSEEPVSGAVYRQQ
LAASCASQIVALLNGGQQGRSGFVQADQPLRGCLPSDIAILVRDGREAQLIRAELAARDV
RSVYLSDKDSVFAAQEAHDLLAWLKACAEPDAERLLKAALASITLNLPLSALAQLNQDER
VWERWVMQFRQYRLIWRSQGVLPMLRRLLHDFDLPQVLIARSDGERVLTNLLHLAELLQQ
AATELDGEQALIRHLGEHLASSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYPLVFLPF
ICTSKPVDGSRLPLAWHDSEGQAHLTLTPDADQIALADDERLAEDLRLLYVALTRAQHAC
WLGVADLKRGTGKTSTLHRSALGYLLGGGSALPASTQLGDWLQALQSGCPSIASIALPVP
DEQAYSAPRNQTELLPARQPKRRAAENWWIASYSALRIGEEAMTLAADSSQAQQLLDDER
PDLQQLREVMPGSGDIHRFPRGPNPGTFLHGLLEWAGHEGFAQVSAAPEQLTRTVGQRCN
RRDWTGWIPTLSKWLQQLLEQPMALAPDSSPLSLSQLDQYQIEMEFWFASHKVDVGRLDQ
LVCEYTHQGVARLAAQPALLNGMFKGFIDLAFEHDGRYYVADYKSNWLGPDDQAYSELAM
EGAILSHRYDLQYVLYLLALHRQLRARLPGYDYDRHVGGALFIFLRGVDSASRGLYFAKP
PRELIEQLDALFRGVSTPQQHDLFLGDAP
NT seq
3690 nt
NT seq
+upstream
nt +downstream
nt
atgagccttgctgttgccccagcccccctggccctgacctttcccctgcacggcagtcag
ctgatcgaagccagcgccgggaccggcaagaccttcaccatctcggcgctgtacctgcgc
ctggtgcttggtcatggcggcgagcagggctttggccgcgaactgttgccaccccagatc
ctggtggtgaccttcaccgacgccgctaccaaggaactgcgggagcgtatccgcacccgc
ctggcagaagccgcgcgctacttccgtggtgaattgagcgaagccgatcccttgctccag
caactgcgcgatgactatcagccgtcgctgcgggccgcctgtgccaaccgcctggacgtg
gccgcgcagtggatggacgaagctgcggtgtcgaccatccacagttggtgccagcgcatg
ctgcgcgagcatgctttcgacagcggcagcctgtttacccagaccctggaaaccgaccat
agcgacctgctgggccaggtcatgcgtgattactggcgacgcttctgctacagcatgcag
ggcgatgcgctggcctgggtacgcagccattgggtcagccctgaaaccttgctgccccgg
gtgcgcgcgctgttcgggcgccagcacatcgacagcaatgaagaagagccgcaggcgctg
atcgacgcggtgctggagcaacgcgctgaattgctgcgcacactcaaggcgccctgggcg
caatggtccggcgagttgctgcagatctgtcgtgagggcctggccgccaagcaggtcgac
gggcgcaagatgcaggcgcgctacttcgagccctggtgtgaaaagctcaaggcctgggcc
gaggacgatcaggcgttggagctggacctgggtaccggcttcagtcgctttacccgcgcc
ggcatggctgaagcctggaagggcgaagcgccaagtcacccggcattgcaggcaatggaa
ggtttgcgtgatcagctccaggggctgcccactcccgatgcctgtctgctcgaacatgcc
gccgcctgggttggcgcacgcttcgaacaggagaaacgccgccgcgccgagatgggtttc
gacgacatgctcctgcgcctcgaccatgcgctgcatggcgatgctggcgagcgcctggcc
gggctgatccgcgagcagttcccggtggcactgatcgatgaattccaggacaccgacccg
gtgcagtaccggatcttccagcgcatctaccggattgaagagaacgttcgcgacaccggc
ctgttcctgatcggcgaccccaagcaggcgatctatgccttccgcggcgccgacatcttc
acctacctgggggcacgacgggccacggccgggcgcctgcacagcctcgataccaactac
cgctcaagccaggccatggtcacggcggtcaaccatgtgttcatgcaggccgaagtgcgc
gagcaggggcgtggcgccttcctgtttcgcgacggcagcgacaacccggtgccgtttctc
gaggtcaaggccaagggccgtagcgagcagttgcaggtcgatggctcgccggtacccgca
ctgaatctctggcaactgagcagtgaagagccggtgtccggcgccgtttatcgccagcaa
ctggccgccagctgcgccagtcagatcgtcgccctgctcaatggcgggcagcaggggcgc
agtggtttcgttcaggctgatcagccactgcgcggctgcctgccgtcggacatcgccatt
ctggtacgcgatggccgcgaggcgcagttgatccgagccgagctcgcggctcgcgatgta
cgcagcgtgtacctgtcggacaaagactcggtgttcgccgcccaggaggcccatgacctg
ctggcctggctcaaggcctgcgccgagccggacgccgagcgcctgctcaaggccgcgctg
gcaagcatcaccctcaacttgccgcttagcgccctggcacaattgaaccaggatgagcgg
gtctgggagcgctgggtcatgcagttccgccagtaccggctgatctggcgcagccagggg
gtgttgccgatgctgcggcgcctgctgcacgacttcgacctgccgcaggtgttgatcgcc
cgcagcgatggcgagcgggtgctgaccaacctgctgcacctggccgagctgctgcaacag
gcggctaccgagctcgatggtgagcaggcgttgattcgtcatctgggcgaacacctggcc
agttccgggcaggccggcgaggagcagatcctgcgcctggaaagcgatgagcaactggtc
aaggtggtgaccatccacaagtccaagggcctggagtatcccttggtgttcctgcccttc
atctgcaccagcaagccggtggatggctcgcgcttgccactggcctggcacgacagcgaa
ggccaggcacacctgaccctgaccccggatgccgaccagatcgccctggccgacgatgag
cgcctggccgaggacttgcgcctgctgtacgtggccctgacccgcgcccagcatgcctgc
tggcttggtgtcgccgaccttaagcgtggtaccggcaagacctcgaccttgcaccgttcg
gccctgggttacctgttgggcggcggcagcgccttgccagcctcgacccagttgggcgat
tggctgcaggctttgcaatccggttgcccatccatcgccagcatcgctttgccagtgccc
gatgaacaggcctacagcgccccacgcaaccagaccgaactgctgcccgcacgccagccc
aaacgccgggcagcggaaaactggtggatcgcttcctacagcgccttgcgtatcggcgaa
gaggccatgaccctggcggccgacagctcccaggcgcaacaactgcttgatgacgagcgg
cccgatctgcagcagttgcgtgaagtcatgcccggcagcggtgatattcatcgcttcccc
cgtgggccgaaccccggcaccttcctccacggcctgctcgaatgggccgggcatgaaggt
ttcgcccaggtcagcgctgcccccgagcaattgacccgcaccgttggccagcgctgcaac
cgccgcgactggaccggctggatcccgaccctcagcaaatggttgcagcaattgctcgag
caacccatggccctggcgcccgacagttcgccgttgtccttgagccagttggaccagtac
cagattgaaatggagttctggtttgccagccacaaggtcgatgtcggcaggctcgatcaa
ctggtgtgcgaatacacccatcagggcgtcgcacgcctggccgcgcaaccggcgctgctc
aatggcatgttcaagggctttatcgacctggccttcgaacatgacggccgctactacgtg
gcggactacaaatccaactggctcggccctgatgaccaggcctacagcgaactggccatg
gaaggggcaatcctcagccaccgctacgacctgcagtacgtgctctacctgttggccctg
caccgccagttgcgcgcacggctacccggttatgactacgaccggcatgtcggcggcgcg
ctgttcatcttcctgcgcggtgtcgattcggcatcccgcggcttgtatttcgccaagcca
ccgcgtgagctgatcgagcagctcgacgccctgttccgcggtgtcagcaccccgcaacaa
cacgacctgtttctcggagacgcaccatga
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integrated database retrieval system
