Pseudomonas donghuensis: BV82_0545
Help
Entry
BV82_0545 CDS
T07361
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
pdw
Pseudomonas donghuensis
Pathway
pdw03030
DNA replication
pdw03430
Mismatch repair
pdw03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pdw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BV82_0545 (dnaE)
03430 Mismatch repair
BV82_0545 (dnaE)
03440 Homologous recombination
BV82_0545 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdw03032
]
BV82_0545 (dnaE)
03400 DNA repair and recombination proteins [BR:
pdw03400
]
BV82_0545 (dnaE)
Enzymes [BR:
pdw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
BV82_0545 (dnaE)
DNA replication proteins [BR:
pdw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
BV82_0545 (dnaE)
DNA repair and recombination proteins [BR:
pdw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
BV82_0545 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
tRNA_anti_2
T2SSK
HROB
Motif
Other DBs
NCBI-ProteinID:
KDO01590
UniProt:
A0AAP0SMS0
LinkDB
All DBs
Position
1446088..1449609
Genome browser
AA seq
1173 aa
AA seq
DB search
MSASFVHLRLHTEYSLVDGLVRIKPLAKALVAMNMPAVAVTDQSNMCSLVKFYKNAMGAG
IKPICGADLWLANSDPDAPLSRICLLAMDAKGYRNLTELISRGWVDGQRNGLVIIERPWI
AEASEGLIALSAAKEGDIGMALLNGNPDEAEALLRDWLQMFPERFYVEVQRTNRAGDEEY
LHAAVALADKLDAPLVATNDVRFIKQSDYDAHETRVCIGEGRALDDPRRSRNYSDQQYLK
SPEEMAELFSDLPEAIANTVEIAKRCNIQVQLGKHFLPDFPTPNGMGIDDYLRHVSHEGL
EERLAVLWPKDTTPNYEEKRQVYLDRLKFELDIIIQMGFPGYFLIVMDFIKWAKNNGVPV
GPGRGSGAGSLVAYVLKITDLDPLAYDLLFERFLNPERVSMPDFDVDFCMDGRDRVIEYV
ADAYGRNAVSQIITFGTMAAKAVVRDVARVQGKSYGLADRLSKMIPFEVGMTLEKAYEQE
EILRDFLKSDEDAKEIWDMALKLEGVCRGTGKHAGGVVIAPTKLTDFSPIACDEEGGGLV
TQFDKDDVEAAGLVKFDFLGLRTLTIIKWAMETINREQAKKGLDDLNIDFIPLDDKKTYD
LLQKAETTAVFQLESRGMKELIKKLKPDCLEDLIALVALFRPGPLQSGMVDDFINRKHGR
AELAYPHSDYQYEGLKPVLAPTYGIILYQEQVMQIAQVMAGYTLGGADMLRRAMGKKKPE
EMAKQRGGFIEGCATNNIDPDLAGNIFDLVEKFAGYGFNKSHSAAYGLVSYQTAWLKTHH
PAPFMAAVLSADMHNTDKVVTLIEEVRSMKLRLDAPDVNTSDFKFTVNDDGRIVYGLGAI
KGVGEGPVEAIVEARAAGPFKDLFDFCERVDLKRINKRTLDALIRSGALDRLGPYFHDEL
KAYQANIDRNRAVLLAAMEEAIKSAEQTARTADSGHADLFGGLFVEADADVYANHRKARE
LTLKERLRGEKDTLGLYLTGHPIDEYEGEIRRFARQRIIDLKPARDTQTVAGMIIALRVM
KNKKGDKMGFVTLDDRSGRIEASLFADAFMAAQALLQTDAMVVVEGEVSNDDFSGGLRLR
VKRVMSMEDARTNLAESLRLKVHADALKGDRLSWLGELFKRHRGACPITMEYTGSDAKAM
LQFGESWRIDPADGLIQALRDQFGRENVFLQYR
NT seq
3522 nt
NT seq
+upstream
nt +downstream
nt
atgtcggcttctttcgttcatcttcgcctgcacaccgaatactcgctggtcgatggcctg
gtgcggatcaagccgctggccaaggcattggtggcgatgaacatgccggcggtcgcggtc
accgaccagagcaacatgtgctcgctggtcaagttctacaagaacgccatgggcgccggc
atcaagccgatctgcggcgccgacctgtggctggccaacagcgacccggatgcgccgctg
tcgcgcatctgcctgctggcgatggacgccaagggctaccgcaaccttaccgagttgatc
tcccgcggctgggtcgacggccagcgcaatggcctggtgatcatcgagcggccgtggatc
gccgaggccagcgaggggctgattgccctgtctgcggcaaaggaaggcgacatcggcatg
gcgttgctcaatggcaacccggatgaagccgaagcgttgctgcgcgactggctgcagatg
ttcccggagcgcttttacgtcgaggtgcagcgcaccaaccgcgccggtgacgaagaatac
ctgcacgccgccgtggccctggccgacaagctggacgcgccgctggtggcgaccaacgat
gtgcgcttcatcaagcagtccgactacgatgcccacgaaacccgtgtgtgcatcggcgaa
ggccgtgccctggacgatccgcgccgctcgcgcaactacagcgatcagcagtacctgaaa
agccctgaggaaatggccgagctgttcagcgacctgcccgaggcgattgccaacaccgtc
gagatcgccaagcgctgcaatatccaggtacagctgggcaagcacttcctgcccgacttt
ccgacgcccaacggcatgggtatcgacgactacctgcgccatgtttcccacgaaggcctg
gaagagcgcctggcggtgctgtggcccaaagacaccacaccgaattacgaagagaagcgc
caggtctacctcgaccgcttgaagttcgagctggatatcatcatccagatgggcttcccc
ggttacttcctgatcgttatggacttcatcaagtgggccaagaacaacggcgtgccggtt
ggcccgggccggggctcgggtgccggctcgctggtcgcctacgtgttgaagattaccgac
ctcgacccgctggcctatgacctgctgttcgaacgtttcctcaacccggaacgggtatcg
atgcccgacttcgacgtcgacttctgcatggatggtcgtgaccgggtcatcgaatacgtg
gccgacgcctacgggcgcaatgccgtgagccagatcatcaccttcggcaccatggccgcc
aaggcggtggtgcgggacgtggcgcgggtgcagggcaagtcctacggcctggctgaccgt
ctgtcgaagatgatccccttcgaagtcggcatgaccctggaaaaggcctacgagcaggaa
gagattctgcgcgatttcctcaagagcgacgaagacgccaaggaaatctgggacatggcc
ctcaagctcgagggcgtctgccgcggtaccggtaagcacgccggtggtgtggttatcgct
ccgaccaagcttacagacttttcgccgattgcctgtgatgaagagggcggcggcctggtc
acccagttcgacaaggatgacgttgaggctgcgggcctggtgaagttcgacttcctcggt
ctgcgaaccctgacgatcatcaagtgggcgatggaaaccatcaaccgcgagcaggccaag
aaaggcctggatgacctgaacatcgacttcatcccgctggatgacaagaaaacctacgac
ctgctgcaaaaagccgaaaccacggcggtgttccagcttgaatcgcggggcatgaaggag
ctgatcaagaagctcaagcccgactgcctggaagacctgatcgcactggtggcgctgttc
cgtcccggcccgttgcaatcgggcatggtggatgacttcatcaaccgcaagcacggtcgt
gcggaacttgcctacccgcattcggattatcagtacgaaggcctcaagcccgttctggcg
ccgacctacggcatcatcctgtaccaggaacaggtgatgcagattgcccaggtcatggcc
ggttacaccctcggaggtgcggacatgctgcgtcgagccatgggtaagaaaaagcccgag
gaaatggccaagcagcgcggcggtttcatcgaaggttgtgccacgaacaacatcgatccg
gacctcgccggtaacattttcgacctggtggagaagttcgccggttacggcttcaacaaa
tcccactccgccgcctatggcctggtttcctaccagaccgcctggctcaagacccaccac
ccggcgccgttcatggctgcggtgctgtcggcggatatgcacaacaccgacaaggtcgtg
accctgatcgaggaagtgcgcagcatgaagctgcgcctcgatgcgccggacgtgaacacc
tccgacttcaagttcacggtcaatgacgatggccgcatcgtctacggcctgggggcgatc
aagggcgtgggtgaggggccggtcgaggccatcgtcgaagcccgcgctgctggcccgttc
aaggacctgttcgacttctgcgagcgggtcgacctcaagcgcatcaacaaacgcaccctc
gacgcactgatccgtagcggtgcgctggatcgcctgggcccgtacttccatgacgagctc
aaggcctaccaggccaatatcgaccgcaaccgggcggtactgctggcggcgatggaagag
gccatcaagtctgccgagcagaccgcgcgcacggccgatagcggccatgccgacctgttc
ggcgggttgttcgtcgaagcggatgccgacgtttatgccaaccaccgcaaggctcgcgag
ctgaccctcaaggagcgcctgcgcggtgaaaaagacaccctgggcctgtacctgaccggt
cacccgatcgatgagtatgaaggcgagatccgccgctttgcccgccagcgcatcattgac
ctgaagcctgcgcgcgacacccagaccgttgccgggatgatcattgccctgcgggtgatg
aagaacaagaagggcgacaagatgggctttgtcaccctcgacgaccgctccgggcgcatc
gaggcgtcgctgttcgccgatgccttcatggctgcccaggcgctgttgcagaccgatgct
atggtggtggttgaaggcgaggtcagcaacgacgatttctccggtggcctgcgcctgcgg
gtcaagcgggtgatgagcatggaagatgcccgcaccaaccttgccgaaagcctgcgcctg
aaggtgcatgccgatgccctcaagggggaccggctgagctggctgggcgagttgttcaag
cgccatcgcggcgcctgcccgatcaccatggaatataccggcagcgatgccaaggccatg
ctgcagttcggcgaaagctggcgtatcgacccggccgatggcctgattcaggccctgcgt
gaccagttcggacgtgagaacgtctttttgcaatatcgatga
DBGET
integrated database retrieval system
