Pseudomonas donghuensis: BV82_1573
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Entry
BV82_1573 CDS
T07361
Symbol
dapF
Name
(GenBank) diaminopimelate epimerase
KO
K01778
diaminopimelate epimerase [EC:
5.1.1.7
]
Organism
pdw
Pseudomonas donghuensis
Pathway
pdw00300
Lysine biosynthesis
pdw00470
D-Amino acid metabolism
pdw01100
Metabolic pathways
pdw01110
Biosynthesis of secondary metabolites
pdw01120
Microbial metabolism in diverse environments
pdw01230
Biosynthesis of amino acids
Module
pdw_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
pdw00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
BV82_1573 (dapF)
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
BV82_1573 (dapF)
Enzymes [BR:
pdw01000
]
5. Isomerases
5.1 Racemases and epimerases
5.1.1 Acting on amino acids and derivatives
5.1.1.7 diaminopimelate epimerase
BV82_1573 (dapF)
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Motif
Pfam:
DAP_epimerase
PhzC-PhzF
SPO11_like
Tail_completion_gp17
Motif
Other DBs
NCBI-ProteinID:
KDO00479
UniProt:
A0AAP0SIL6
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All DBs
Position
5623435..5624265
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AA seq
276 aa
AA seq
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MLLRFTKMHGLGNDFMVLDLVSQHAHILPKHAKQWGDRHTGIGFDQLLIVEAPSNPEVDF
RYRIFNADGSEVEQCGNGARCFARFVLDKRLTAKKRIRVETKGGIIELDVRNDGQISVDM
GPPRLVPAEIPFEAPAQALSYPLEVAGRNVELFAASMGNPHAVLRVDDINAAPVHELGPQ
IEHHPRFPQRVNVGFIQVIDRHRAQLRVWERGAGETQACGTGACAAAVAAISQGWMDSPL
LIDLPGGRLSIEWAGPGTPVLMTGPAVRVFEGQVRL
NT seq
831 nt
NT seq
+upstream
nt +downstream
nt
atgctgctgcgttttaccaagatgcatgggctgggcaacgacttcatggtcctcgacctg
gtcagccagcatgcgcacattttgcccaagcacgccaagcaatggggcgaccgccacacc
ggcatcggcttcgaccaactgctgatcgtcgaggcgccaagcaatccggaagtggatttc
cgctaccggatcttcaacgccgacggctccgaggtcgaacagtgcggcaacggtgcgcgc
tgctttgcgcgcttcgtgctggacaagcgcctgaccgcgaaaaaacgcatccgcgtcgaa
accaagggcggcatcatcgagctggacgtgcgcaacgacgggcagatcagcgtcgacatg
ggcccgccgcggctggtgccggccgagatcccgttcgaggcgccggcccaggccctgagc
tacccgctcgaggtcgccgggcgcaacgtggaactcttcgccgcatcgatgggcaacccc
catgcggtactgcgggtcgacgacatcaacgccgcaccggtgcacgaactgggcccgcag
atcgaacatcacccgcgcttcccgcagcgggtcaatgtcggcttcatccaggtcatcgac
cgccaccgcgcgcaactgcgggtgtgggaacgtggcgctggcgaaacccaggcctgcgga
accggcgcctgcgccgcagccgtggcggcgatcagccagggctggatggactcaccgctg
ttgatcgacctgccgggtgggcgcctgtccatcgaatgggcaggcccgggcacaccggtg
ctgatgaccggccccgccgtacgcgtgtttgaaggacaggttcgtctatga
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