Pseudomonas donghuensis: BV82_1964
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Entry
BV82_1964 CDS
T07361
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pdw
Pseudomonas donghuensis
Pathway
pdw03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pdw00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
BV82_1964 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pdw03021
]
BV82_1964 (rpoC)
03400 DNA repair and recombination proteins [BR:
pdw03400
]
BV82_1964 (rpoC)
Enzymes [BR:
pdw01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
BV82_1964 (rpoC)
Transcription machinery [BR:
pdw03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
BV82_1964 (rpoC)
DNA repair and recombination proteins [BR:
pdw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
BV82_1964 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
KDO00141
UniProt:
A0AAP0SGP9
LinkDB
All DBs
Position
complement(5204316..5208515)
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVNDRDGGSVKNTRIVDTTVGRALLFQVVPPGLSYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGTATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRNGDEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTEQGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTDDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL
HNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGDKVDAGAIVAKW
DPHTHPIVTEMKGTVTFVGMEEGITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRPAIKM
VDANGKDLLLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEIAESGDSSFIKGDQMELTQVLVENERLGAEDKFVSKFTRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgtatcggattggcctcgcctgagatgatccgttcgtggtcgttcggtgaagttaaaaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggcctgttctgcgccaag
atttttggcccagtcaaggactacgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgcggtgtgatctgcgagaagtgcggcgttgaagtcgccctggccaaggtgcgtcgtgag
cgcatggcgcacatcgaactcgcttcgccggttgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcttgctgatggacatgaccctgcgtgatatcgaacgcgttctctac
ttcgagagctatgtcgttatcgacccgggcatgaccaccctggaaaaaggccagctgctc
aacgacgagcagtacttcgaagcgctggaagagttcggcgatgacttcgacgcccgcatg
ggtgccgaggctgtccgcgagctgctgcacgctatcgacctggagcacgagattggtcgc
ctgcgcgaagagattccgcagaccaactcggaaaccaagatcaagaagctgtccaagcgt
ctgaaactgatggaagccttccagggctcgggcaacctgcctgagtggatggtcctgacc
gttctgccggttctgccgccagacctgcgtccattggttccgctggatggcggtcgcttc
gcgacttccgacctgaacgacctgtatcgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctcgacctgtccgcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgacgccttgctggataacggccgtcgcggtcgtgccatcaccggttcgaac
aagcgtcctctgaaatccctggccgacatgatcaagggtaagcaaggtcgtttccgtcag
aacttgctcggtaagcgtgttgactactccggccgttcggtaattaccgtaggtccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggctctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggccgccaagaagatg
gtcgagcgcgagctgccagaggtttgggacgttctcgccgaagtgattcgcgaacacccc
gtactgctcaaccgtgcaccgacccttcaccgtctgggtatccaggcctttgaaccggta
ctgatcgaaggtaaggctatccagctgcacccgctggtctgtgctgcgtacaacgccgac
ttcgacggtgaccagatggccgttcacgtgccgctgacgctggaagcccagcttgaagca
cgcgcgctgatgatgtcgaccaacaacattctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgttgtactgggtctgtactacatgacccgtgaagccatcaacgcc
aagggcgaaggtcgcgtattcgccgacctgcaggaagtcgaccgcgtattccgcgccggc
gaagctgccctgcacgccaagatcaaggttcgtatcaacgaaaccgttaacgatcgtgat
ggcggcagcgtcaagaacacccgtatcgtcgacaccactgtcggccgtgcgctgctgttc
caggttgtaccaccaggtctgtcgtacgacgtggtcaaccagccaatgaagaaaaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagaccgtgatcttc
gctgaccagctgatgtacaccggttttgcctactcgaccatctccggcgtttccatcggt
gttaacgacttcgttatcccggatgaaaaagcccgcatcatcggtaccgctaccgacgaa
gtgaaagagatcgagagccagtacgcctccggcctggtaacccagggcgagaagtacaac
aaagtcatcgacttgtggtccaaggcgaacgacgaagtctccaaggcgatgatggccaac
ctctcgaaagagaaagtcatcgaccgcaatggcgacgaagtcgagcaagagtccttcaac
tcgatgtacatgatggctgactccggtgcccggggttcggcagctcagattcgtcagctg
gctggtatgcgtggtctgatggccaaaccggacggctcgatcatcgagacgccgatcacc
gcgaacttccgtgaaggtctgagcgtactccagtacttcatctcgactcacggtgctcgt
aagggtctggcggataccgcgttgaaaaccgcgaactccggttacctgactcgtcgtctg
gtagacgtagcccaggatctggtggttaccgagatcgactgcggcaccgagcaaggcctg
ctgatgacgccgcacattgaaggcggcgacgttgtagagcctctgggtgagcgtgtactg
ggtcgtgttatcgcccgtgacgtgttcaagccaggcaccgacgacgttatcgttccggcc
ggtaccctggtcgacgagaagtgggtcgagttcatcgagctgaacagcatcgacgaagtg
atcgtgcgttcgccaatcagctgcgaaacccgctacggcatctgcgccaagtgctacggt
cgcgacctggctcgcggtcaccaggtgaacatcggtgaagcagtcggcgttatcgctgcc
cagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgct
gcaagccggacctcggctgccgacagcgtccaggtgaagaacggcggtatggttcgcctg
cacaacctgaaacaggttgagcgtgccgacggtaacctggttgccgtatcgcgttccggt
gagttggcgattgccgacgaattcggtcgtgagcgtgagcgctacaagctgccttacggt
gcagtgatttcggtgaaggaaggcgacaaggtcgacgctggcgcaatcgtcgccaagtgg
gacccgcacacccacccgatcgttaccgaaatgaaaggtaccgtgaccttcgtgggcatg
gaagaaggcatcaccatcaagcgtcagactgacgaattgactggtttgaccaacattgaa
gttctggacgtcaaagaccgtccggctgcaggtaaggaaatccgtcctgcaatcaagatg
gtcgacgccaacggcaaggatctgctgctgccaggtaccgacgtaccggctcagtacttc
ctgccggccaacgccctggttggtgtggctgacggtgcccagatcggcgtcggtgacgtt
atcgcgcgtatcccgcaagaaacgtcgaagacccgtgacatcaccggtggtctgccacgg
gttgccgacttgttcgaagcccgtcgtccgaaagaagcctcgattctggctgaagtcagc
ggcaccatcgccttcggtaaagagaccaagggcaagcgccgtctggtcatcaccccgaac
gacggtagcgatccgtacgaagagctgattccgaagtggcgtcacctgaacgtcttcgaa
ggcgaacaagtgaaccgcggcgaagttatctccgacggtccgagcgatccgcacgacatc
ctgcgtctgctgggtgtcagcgcgctggccaagtacatcgtcaacgagattcaggacgtt
taccgtctgcaaggcgttaagatcaacgacaagcacatcgaaaccatcctgcgtcagatg
ctgcgcaaggtcgagattgccgagtcgggtgactccagcttcatcaagggcgaccagatg
gagctgacccaggtactggtagagaacgagcgccttggcgcggaagacaagtttgtctcc
aagttcactcgcgtactgctgggtatcaccaaggcctcgctgtccaccgaatcgttcatc
tcggcggcttccttccaggaaaccacccgcgtactgaccgaagcggcggtaaccggcaag
cgcgattacctgcgcggcctgaaagaaaacgtggtcgtgggtcgtctgatcccggccggt
accggtctggcctaccacagcgagcgcaagcgtcgccgtgatgccgacaagccgctgcgc
gtaagtgccagtgaggtggaagccgcactgaccgaagcgctgaattccagcggtaactga
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integrated database retrieval system
