Pseudomonas donghuensis: BV82_2784
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Entry
BV82_2784 CDS
T07361
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pdw
Pseudomonas donghuensis
Pathway
pdw03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pdw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BV82_2784 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pdw03019
]
BV82_2784 (rnr)
03016 Transfer RNA biogenesis [BR:
pdw03016
]
BV82_2784 (rnr)
Enzymes [BR:
pdw01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BV82_2784 (rnr)
Messenger RNA biogenesis [BR:
pdw03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BV82_2784 (rnr)
Transfer RNA biogenesis [BR:
pdw03016
]
Prokaryotic type
tRNA degradation factors
BV82_2784 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
RNase_II_C_S1
WHD_RNase_R
OB_Dis3
Motif
Other DBs
NCBI-ProteinID:
KDN99572
UniProt:
A0AAP0XA22
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All DBs
Position
701047..703638
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AA seq
863 aa
AA seq
DB search
MADWQTLDPEAAREAEKYENPIPSRELILQRLDERGSPAAREQLVEEFGLTTEDQIEALR
RRLRAMERDGQLIYTRRGTYAPVDKLDLILGRIAGHRDGFGFLIPDDGSDDLFLSPAQMR
LVFDGDRALARVSGLDRRGRREGVVVEVISRAHESIVGRYFEEGGIGFVTPDNPKVQQEV
LITPGRNGGAKIGQFVEVKITHWPTPRFQPQGDITEVIGNYMAPGMEIDVALRSYDIPHV
WPEAVIKEARKLKPEVEEKDKEHRVDLRHLPFVTIDGEDARDFDDAVYCESLGKLRLFSG
GWRLYVAIADVSSYVRLGSALDAEAQVRGNSVYFPERVVPMLPEELSNGLCSLNPHVDRL
AMVCEMTINKSGQMVDYQFYEAVIHSHARLTYNKVSSMLEHARTREGKALREQYSNVVPD
LKQLYALYKVLLAARHTRGAIDFETQETRIIFGSERKIAEIRPTVRNDAHKLIEECMLAA
NVATAEFLKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKEGPSPKDYQALLAS
IADRPDFHLIQTVMLRSLSQAVYSADNNGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRSV
IRSRQETPHVKRAGAMSIPKARIYPYDEATLEQLGEQCSMSERRADEATRDVVNWLKCEY
MKDRVGESFPGVITAVTGFGLFVELTDIYVEGMVHVSALPGDYYHFDPVHHRLAGERTGR
NFRLGDTVEVRVMRVDLEQRKIDFEMAENTLKAPIGRKQRGEGVRPQDGKPVPVLDKAEV
TKAAEPARRSKKNETAEAYFPSHAAAKNAEVRKSREMKKALMSDAKHAGSKPASKSGKSE
KPSKHRKGPPKAGSASRKPKAKS
NT seq
2592 nt
NT seq
+upstream
nt +downstream
nt
atggccgattggcagaccctcgatcccgaggccgctcgtgaagcggaaaaatacgaaaac
cctattcctagccgtgagctgatcctccagcgtctggacgagcgcggctcgccggcagcc
cgtgagcagctggtcgaagagttcggcctgaccaccgaagaccagatcgaagccctgcgc
cgccgcctgcgtgcgatggagcgcgacggccagctgatctatacccggcgcggcacttat
gccccggtagacaagctcgacctgatcctcggccgcatcgccggccaccgcgacggcttc
ggtttcctgatcccggatgacggcagcgacgacctgttcctcagccccgcacaaatgcgc
ctggtgttcgatggcgaccgcgccctggcccgggtttccggcctggaccgtcgtggccgc
cgcgaaggtgtggtggtcgaagtgatctcccgtgcccacgagagcatcgtcggccgctac
ttcgaagaaggcggtatcggctttgtcacccccgacaaccccaaggtccagcaggaagtg
ctgatcaccccgggtcgcaacggcggtgccaagatcggtcagttcgtcgaggtcaagatc
acccactggccgaccccgcgcttccagcctcagggcgatatcaccgaagtgatcggcaac
tacatggccccgggcatggaaatcgacgttgccctgcgcagctacgatattccgcatgtc
tggccagaagccgtgatcaaggaagcgcgcaagctcaagccggaagtcgaagagaaagac
aaagagcaccgcgtcgatctgcgccatctgccgttcgtcaccatcgacggcgaagatgcc
cgcgacttcgacgatgcggtgtactgcgagagcctgggcaagttgcgcctgttctccggt
ggctggcgcctgtacgtggcgatcgccgacgtctccagctacgtgcgcctgggttctgcc
ctggatgccgaagcccaggtgcgcggcaactcggtgtatttccccgagcgcgtggtgccg
atgctgcccgaagagctgtccaacggcctgtgctcgctgaacccgcacgtcgaccgcttg
gcgatggtctgtgaaatgaccatcaacaagtccgggcagatggtcgattaccaattctac
gaagcggtgatccactctcatgcgcgcctgacctacaacaaggtcagcagcatgctcgaa
cacgcccgtacccgcgaaggcaaggccctgcgcgagcagtacagcaacgtggtgccggac
ctcaagcagctctatgcgctgtacaaggtgctgctggcggcccgtcatacccgtggtgcg
atcgacttcgaaacccaggaaacccggatcatcttcggttccgagcgcaagatcgccgaa
attcgcccgaccgtgcgcaacgacgcccacaagctgatcgaagagtgcatgctggcggcc
aacgtggccaccgccgagttcctcaagaagcacgaaatccctgcgctgtaccgtgttcac
gacggcccgccaccggagcgtctggaaaaactgcgcgccttcctgggcgagctgggcctg
tccctgcacaagggcaaggaggggccgtcgcccaaggattaccaggcactgctggcgagc
atcgccgaccgcccggatttccacctgatccagaccgtgatgctgcgctccctgagccag
gcggtgtacagcgccgacaacaatggccacttcggtctgaattacgaggcgtacacccac
ttcacctcgccgatccgtcgctacccggacctgctcacccaccgggccatccgcagcgtg
atccgttcgcgccaggaaaccccgcacgtcaagcgtgccggtgcgatgagcattcccaag
gcgcgtatctacccgtacgacgaggcgaccctggagcagctcggcgagcagtgttcgatg
agcgagcggcgtgccgacgaggccacccgcgacgtggtcaactggctcaagtgcgagtac
atgaaagaccgcgtcggcgagagcttcccgggtgtgatcaccgcggtgaccggctttggc
ctgttcgtcgagctgaccgacatctacgtcgaaggcatggtgcacgtcagcgccttgccg
ggtgattactaccacttcgaccctgtgcatcaccgcctggccggtgaacgtaccgggcgc
aacttccgcctgggcgacaccgtcgaggtgcgggtgatgcgcgtcgatctcgagcagcgc
aagatcgacttcgagatggccgagaacaccctcaaggcgccgattggtcgcaagcagcgt
ggcgaaggcgtgcgtccacaagacggcaagccggtaccggtgctcgacaaggctgaagtg
accaaggccgctgaacctgcgcgccggagcaagaagaacgaaaccgccgaagcctatttc
ccctcccatgccgcggcgaaaaacgccgaagtgcgcaagagccgggagatgaagaaggcc
ttgatgtccgatgccaagcacgcaggtagcaagccggcatccaagtcgggcaagtcggaa
aaaccgagcaagcaccgtaaagggccgccgaaagccggctccgcgtcacgtaaacccaag
gccaagtcatga
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