Pseudomonas donghuensis: BV82_3907
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Entry
BV82_3907 CDS
T07361
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pdw
Pseudomonas donghuensis
Brite
KEGG Orthology (KO) [BR:
pdw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pdw03032
]
BV82_3907 (topA)
03400 DNA repair and recombination proteins [BR:
pdw03400
]
BV82_3907 (topA)
Enzymes [BR:
pdw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
BV82_3907 (topA)
DNA replication proteins [BR:
pdw03032
]
Prokaryotic type
DNA Topoisomerases
BV82_3907 (topA)
DNA repair and recombination proteins [BR:
pdw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
BV82_3907 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
KDN98282
UniProt:
A0AAP0SD73
LinkDB
All DBs
Position
complement(3968463..3971075)
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AA seq
870 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGSQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAAGE
APALSPKEKARKQLVARMGVDPDHGWKAKYEILPGKEKVIDELRRLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDR
VVGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEVHADLGTAKDAK
VRFEVARENGEAFKPLNEAQAMAALAQLKSSSYTVAKREDRPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSVDAVEMARSYIESEFGKKYLPEAPI
VYGSKEGAQEAHEAIRPSDVNTHPTKLSGMERDAERLYELIWRQFLACQMPPAQYLSTTV
SVTAGNFELRAKGRILKFDGYTRVLPQQSKPGDDDVLPEMNQGEVLKLIQLDPSQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSES
FSNLMDYGFTAGMEENLDDVAQGERDWKNVLDEFYGDFSNKLKLAEDGEKGMRANQPTLT
NIACKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESRVL
LNKHRCPICSTAMDAYLLDEKRKLHICGNNPDCTGYEIEEGNYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNAECKNTRKLLKSGEAAPPKMDAVKMPELKCEKVNDTYVLRDGA
SGLFLAASQFPKNRETRAPLVIEIIPHKDEIDPKYHFLCEAPKKDPDGRPAVIRYSRKTK
EQYVQTEVDGKPTGWRAFYDGNAWKVEDKR
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggctaaggccaagaccatcaacaagtac
ctgggcagccagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggccagcgccagcaaggagcctgccgccaagcgcggcaaggccgccgcaggcgaa
gcgccggccctgtcgccaaaagagaaggcgcgcaagcagttggtcgcacgcatgggcgtc
gaccctgaccacggctggaaagccaaatacgagattctcccgggcaaggagaaggtcatc
gacgaactgcgtcgcctggccaaagatgccgacaccatctatctcgcaaccgacttggat
cgcgagggggaagccattgcctggcacctgcgcgaagccatcggtggtgatgacagccgc
tacaagcgcgtggtgttcaacgaaatcaccaagaaagccatccaggaagcgttctcgcag
cctggcgagctagatatcgaccgggtcaacgcccagcaggcgcgacgcttcctcgatcgc
gtggtgggctacatggtttcgccactgctgtgggccaagatcgcccgcggcctgtccgcc
ggccgcgtgcagtcggtggcggtgaagctggtggtcgagcgtgagcgcgagatccgtgcc
ttcatccctgaagagtactgggaagtgcacgccgacctgggtaccgccaaggacgccaag
gtgcgtttcgaagtggcccgcgagaacggcgaagccttcaagccgctcaacgaagcccag
gccatggcagcgctggcgcagctcaagtcctccagctacaccgtggccaagcgtgaagac
cgcccgaccagcagcaagccgtcggcgccgttcatcacctcgaccctgcagcaggccgcg
agcaaccgcctgggcttcggcgtgaagaaaaccatgatgatggcccagcgtctgtacgaa
gccggctacatcacctatatgcgtaccgactcgaccaacctctcggtcgatgcggtggaa
atggctcgcagctacatcgaaagcgagttcggcaagaagtacctgcccgaagcgccgatc
gtctacggcagcaaagagggtgcccaggaagcgcacgaagcgattcgtccatccgacgtc
aacacccatccgaccaagctcagtggcatggagcgcgatgccgagcgtctgtacgagctg
atctggcgccagttcctggcctgccagatgccaccggcgcagtacctgtcgaccaccgtc
agcgtcaccgcaggcaacttcgagctgcgcgccaagggccgtatcctcaagttcgacggt
tacacccgggtattgccgcaacagagcaagccgggcgatgacgatgtgctgccggaaatg
aaccagggcgaagtgctcaagctgatccagctcgacccgagccagcacttcaccaagccg
ccggcgcgttactccgaagccagcctggtcaaggagatggaaaagcgcggtatcggtcgt
ccttcgacttatgctgcgatcatctcgaccatccaggatcgcggttacgtgaccctgcac
aaccgccgcttctactccgagaagatgggcgacatcgtcaccgagcgcctgtccgagagc
ttctccaacctgatggactacggcttcaccgccggcatggaagagaacctcgatgacgtg
gcccagggcgagcgcgactggaagaacgtgctggacgagttctacggcgacttcagcaac
aagctgaagctggccgaagacggcgagaagggcatgcgtgccaaccagccgaccctgacc
aacattgcctgcaaggaatgtggccggccgatgatgatccgcaccgcctccaccggcgtg
ttcctcggctgctcgggctacagcctgccgcccaaagagcgttgcaaggccaccgtcaac
ctggtcccgggcgatgaaatcgccgccgacgacgagggtgaatcggaatcgcgcgtgctg
ctcaacaagcaccgctgcccgatctgctcgacggccatggatgcttacctgctcgatgag
aagcgcaagctgcacatctgcggtaacaaccccgattgcaccggctacgagatcgaagaa
ggcaactaccgcatcaagggctacgaagggccgagccttgagtgcgacaagtgcggtagc
gagatgcagctcaagactggccgtttcggcaagttcttcggttgcaccaacgccgaatgc
aagaacacccgcaagctgctcaagagtggcgaggcggcgccgccgaagatggatgcggtg
aagatgccggagctcaagtgcgagaaggtcaacgatacctacgtgctgcgtgacggtgct
tcggggctgttcctggctgccagccagttcccgaaaaaccgcgagacccgtgcacccctg
gtgatcgagatcatcccgcacaaggatgagatcgatccgaagtatcacttcctctgcgag
gcgccgaagaaggacccggacggtcgcccggcggtcatccgctacagccgcaagaccaag
gagcagtacgtgcagaccgaggtcgacggcaagccgaccggctggcgtgcgttctatgac
ggcaatgcctggaaggtcgaagacaagcgctga
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